BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU239482.f
         (392 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_566895.1|  Expressed protein; protein id: At3g47836.1...   132   1e-30
gb|AAK60319.1|AF385728_1  AT3g47831/T23J7 [Arabidopsis thali...    95   2e-19
gb|AAO18438.1|  unknown protein [Oryza sativa (japonica cult...    59   1e-08
ref|NP_011647.1|  Hypothetical ORF; Ygr131wp [Saccharomyces ...    30   9.1  
gb|AAC98967.1|  omega-3 fatty acid desaturase [Vernicia ford...    30   9.1  

>ref|NP_566895.1| Expressed protein; protein id: At3g47836.1, supported by cDNA:
           gi_14326548 [Arabidopsis thaliana]
          Length = 64

 Score =  132 bits (331), Expect = 1e-30
 Identities = 64/64 (100%), Positives = 64/64 (100%)
 Frame = +2

Query: 110 MSIVVSLGTTLNLSWRLRNLKNNPNDPNSVAIYPSSSRCFLESLCVLFLSYNCYIFVSIL 289
           MSIVVSLGTTLNLSWRLRNLKNNPNDPNSVAIYPSSSRCFLESLCVLFLSYNCYIFVSIL
Sbjct: 1   MSIVVSLGTTLNLSWRLRNLKNNPNDPNSVAIYPSSSRCFLESLCVLFLSYNCYIFVSIL 60

Query: 290 GAIK 301
           GAIK
Sbjct: 61  GAIK 64



>gb|AAK60319.1|AF385728_1 AT3g47831/T23J7 [Arabidopsis thaliana]|gi|18700230|gb|AAL77725.1|
           AT3g47831/T23J7 [Arabidopsis
           thaliana]|gi|26452241|dbj|BAC43208.1| unknown protein
           [Arabidopsis thaliana]
          Length = 57

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = +1

Query: 13  MGIVTRAGDWSFKAFTAGLGLATIYLTATFSFNVYRGLSWHNAQ 144
           MGIVTRAGDWSFKAFTAGLGLATIYLTATFSFNVYRGLSWHNAQ
Sbjct: 1   MGIVTRAGDWSFKAFTAGLGLATIYLTATFSFNVYRGLSWHNAQ 44



>gb|AAO18438.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 50

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = +1

Query: 37  DWSFKAFTAGLGLATIYLTATFSFNVYRGLSWHNAQ 144
           D +FKA TAGLG+AT+YL  TFS NVYRGLSWH+ Q
Sbjct: 5   DVAFKALTAGLGVATLYLAGTFSVNVYRGLSWHSEQ 40



>ref|NP_011647.1| Hypothetical ORF; Ygr131wp [Saccharomyces
           cerevisiae]|gi|1723711|sp|P53279|YG3B_YEAST HYPOTHETICAL
           19.2 KD PROTEIN IN ASN2-PHB1 INTERGENIC
           REGION|gi|2132613|pir||S64440 probable membrane protein
           YGR131w - yeast (Saccharomyces
           cerevisiae)|gi|1323217|emb|CAA97144.1| ORF YGR131w
           [Saccharomyces cerevisiae]
          Length = 174

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 134 TTLNLSWRLRNLKNNPNDPNSVAIYPSSSRCFLESLCVLFLSYNCYIFV 280
           T L +  R  + KN      +  I  SSSRC      V F  ++C++F+
Sbjct: 87  TALAVGIRCHSCKNKTYLEQNKIIQGSSSRCHQSQAAVAFFYFSCFLFL 135



>gb|AAC98967.1| omega-3 fatty acid desaturase [Vernicia
           fordii]|gi|5101874|emb|CAB45155.1| omega-3 desaturase
           [Vernicia fordii]
          Length = 387

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +2

Query: 146 LSWRLRNLKNNPNDPNSVAIYP-------SSSRCFLESLCVLFLSYNCYIFVSILGAIK* 304
           L WR    + +  +PNS    P       +S+ CF  S+  L L Y+C++F    G ++ 
Sbjct: 189 LWWRSPGKEGSHFNPNSDFFAPHERKAVLTSNFCF--SIMALLLLYSCFVF----GPVQV 242

Query: 305 MKFFG 319
           +KF+G
Sbjct: 243 LKFYG 247



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 106
effective length of database: 287,249,665
effective search space used: 6893991960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)