BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.006.Contig1
         (465 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM67300.1|  unknown [Arabidopsis thaliana]                     39   0.026
ref|NP_739599.1|  cytochrome oxidase 3 [Ixodes persulcatus]|...    32   2.4  
ref|NP_702293.1|  hypothetical protein [Plasmodium falciparu...    31   5.3  

>gb|AAM67300.1| unknown [Arabidopsis thaliana]
          Length = 60

 Score = 38.9 bits (89), Expect = 0.026
 Identities = 25/60 (41%), Positives = 25/60 (41%)
 Frame = +2

Query: 128 MSSMGANYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPGNRVFPVKSSPLST 307
           MSSMGANYA                                  SS GNRVFPVKSSPLST
Sbjct: 1   MSSMGANYAQLQVMQKKQKEKMMKKKLEKRRDGGVDGEEGGGVSSAGNRVFPVKSSPLST 60



>ref|NP_739599.1| cytochrome oxidase 3 [Ixodes
           persulcatus]|gi|24430376|dbj|BAC22601.1| cytochrome
           oxidase 3 [Ixodes persulcatus]
          Length = 259

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +2

Query: 35  ILSLHYSFNHTFSLFIIIIKLT 100
           I++LH+SF+H FSL +II+ LT
Sbjct: 30  IMTLHFSFSHMFSLALIILMLT 51



>ref|NP_702293.1| hypothetical protein [Plasmodium falciparum
            3D7]|gi|23497474|gb|AAN37017.1|AE014822_52 hypothetical
            protein [Plasmodium falciparum 3D7]
          Length = 3504

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 411  HHITHSDIETHKVNLKIEENISHFIIHSCL--STFS*VDKGEDLTGNTLLPGEE 256
            H I H +IE    +   E+N+ ++IIH  L     S  + GED++ N  L  +E
Sbjct: 1120 HKIIHENIEEDTTSKDNEKNMQNYIIHDDLGKKDISRENTGEDISPNKYLKNKE 1173



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 112
effective length of database: 279,215,389
effective search space used: 11727046338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)