BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV791463.r
         (445 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19273|COA4_TTV1  COAT PROTEIN TP4|gi|419170|pir||S12849 ...    33   0.76 
ref|NP_175745.2|  ABC transporter family protein; protein id...    30   4.9  
gb|AAF69540.1|AC008007_15  F12M16.28 [Arabidopsis thaliana]        30   4.9  

>sp|P19273|COA4_TTV1 COAT PROTEIN TP4|gi|419170|pir||S12849 coat protein TP4 -
           Thermoproteus phage 1|gi|584348|emb|CAA33005.1| coat
           protein TP4 (AA 1-220) [Thermoproteus tenax virus
           1]|gi|584352|emb|CAA32843.1| unidentified reading frame
           (AA 1-61) [Thermoproteus tenax virus 1]
          Length = 220

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 18/66 (27%), Positives = 35/66 (52%)
 Frame = +3

Query: 30  SPTNFLILESF*KKRRLFGLIIHWLK*TNRYIDFICS*NSTELR**WQCINLQATPNASR 209
           +PT+F + E +   +  + L+ ++ K  N  +  +C+ + T L   + CIN+ +T     
Sbjct: 149 APTSFTVQEYYMYTQGSYALLSYFQKNMNNKLFSLCNFDGTNL---YNCINIYSTTGILH 205

Query: 210 YVIHSL 227
           Y+ HSL
Sbjct: 206 YLHHSL 211



>ref|NP_175745.2| ABC transporter family protein; protein id: At1g53390.1
           [Arabidopsis thaliana]
          Length = 1103

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 28/91 (30%), Positives = 42/91 (45%), Gaps = 3/91 (3%)
 Frame = -1

Query: 430 IQTNVNGECTSDFVAFCKKLKKTQTGCKREPSVCLF*---KEQSERKVYLFTCCHWFSPT 260
           ++ NVN   TS +V+ C+       GC  +P+  +     K+  ER+     CC  F   
Sbjct: 134 LKPNVNCNLTS-WVSGCEP----GWGCSVDPTEQVDLQNSKDFPERRRNCMPCCEGFFCP 188

Query: 259 SSLSCCIRKQHKE*MT*REALGVACKLIHCH 167
             L+C IRK+ K        L +AC LI+ H
Sbjct: 189 RGLTCMIRKEFK-------TLTLACILINYH 212



>gb|AAF69540.1|AC008007_15 F12M16.28 [Arabidopsis thaliana]
          Length = 1096

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 28/91 (30%), Positives = 42/91 (45%), Gaps = 3/91 (3%)
 Frame = -1

Query: 430 IQTNVNGECTSDFVAFCKKLKKTQTGCKREPSVCLF*---KEQSERKVYLFTCCHWFSPT 260
           ++ NVN   TS +V+ C+       GC  +P+  +     K+  ER+     CC  F   
Sbjct: 134 LKPNVNCNLTS-WVSGCEP----GWGCSVDPTEQVDLQNSKDFPERRRNCMPCCEGFFCP 188

Query: 259 SSLSCCIRKQHKE*MT*REALGVACKLIHCH 167
             L+C IRK+ K        L +AC LI+ H
Sbjct: 189 RGLTCMIRKEFK-------TLTLACILINYH 212



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 123
effective length of database: 264,485,883
effective search space used: 6347661192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)