BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV550453.f
(405 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK68816.1| Unknown protein [Arabidopsis thaliana]|gi|20... 222 7e-58
ref|NP_214795.1| hypothetical protein Rv0281 [Mycobacterium... 53 1e-06
ref|NP_490438.1| hypothetical protein [Nostoc sp. PCC 7120]... 50 8e-06
ref|NP_215408.1| hypothetical protein Rv0893c [Mycobacteriu... 48 2e-05
ref|NP_625566.1| putative secreted protein [Streptomyces co... 47 4e-05
>gb|AAK68816.1| Unknown protein [Arabidopsis thaliana]|gi|20148267|gb|AAM10024.1|
unknown protein [Arabidopsis thaliana]
Length = 123
Score = 222 bits (566), Expect = 7e-58
Identities = 108/109 (99%), Positives = 108/109 (99%)
Frame = +2
Query: 2 MQSLCAPPPVHFPATAIRRCRTPTLAVRSLRAENEPSIQSALVSASHRLRETNRTEPLFI 181
MQSLCAPPPVHFPATAI RCRTPTLAVRSLRAENEPSIQSALVSASHRLRETNRTEPLFI
Sbjct: 1 MQSLCAPPPVHFPATAISRCRTPTLAVRSLRAENEPSIQSALVSASHRLRETNRTEPLFI 60
Query: 182 DPYAACFLPPYTKKDLDIHEQQQHYCLATKFIDDKLLEIAKRIDGLKQV 328
DPYAACFLPPYTKKDLDIHEQQQHYCLATKFIDDKLLEIAKRIDGLKQV
Sbjct: 61 DPYAACFLPPYTKKDLDIHEQQQHYCLATKFIDDKLLEIAKRIDGLKQV 109
>ref|NP_214795.1| hypothetical protein Rv0281 [Mycobacterium tuberculosis
H37Rv]|gi|15839666|ref|NP_334703.1| conserved
hypothetical protein [Mycobacterium tuberculosis
CDC1551]|gi|7476277|pir||G70835 hypothetical protein
Rv0281 - Mycobacterium tuberculosis (strain
H37RV)|gi|2909470|emb|CAA17356.1| hypothetical protein
Rv0281 [Mycobacterium tuberculosis
H37Rv]|gi|13879787|gb|AAK44517.1| conserved hypothetical
protein [Mycobacterium tuberculosis CDC1551]
Length = 302
Score = 52.8 bits (125), Expect = 1e-06
Identities = 35/108 (32%), Positives = 51/108 (46%), Gaps = 16/108 (14%)
Frame = +2
Query: 119 SALVSASHRLRETNRTEPLFIDPYAACF---------------LPPYTKKDLDIHEQQQH 253
+AL A+ R E +++PL +DPYA F LP + K D E +
Sbjct: 17 TALFVATARALEAQKSDPLVVDPYAEAFCRAVGGSWADVLDGKLPDHKLKSTDFGEHFVN 76
Query: 254 YCLA-TKFIDDKLLEIAKRIDGLKQVVLFTDGMDTRPYRLNWPTSTMI 394
+ A TK+ D+ A G +QVV+ G+D+R YRL WP T +
Sbjct: 77 FQGARTKYFDEYFRRAAAA--GARQVVILAAGLDSRAYRLPWPDGTTV 122
>ref|NP_490438.1| hypothetical protein [Nostoc sp. PCC 7120]|gi|25344922|pir||AD2519
hypothetical protein all7332 [imported] - Nostoc sp.
(strain PCC 7120) plasmid pCC7120alpha
Length = 289
Score = 49.7 bits (117), Expect = 8e-06
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Frame = +2
Query: 116 QSALVSASHRLRETNRTEPLFIDPYAACFLPPYTKKDLDIHEQQ------------QHYC 259
++ALV A+ R E++R++ LF DP+AA K + EQQ Q
Sbjct: 14 RTALVMATKRAIESDRSDHLFDDPFAALLSGDTGKAWREKWEQQDSDNPLGTTLRIQFVA 73
Query: 260 LATKFIDDKLLEIAKRIDGLKQVVLFTDGMDTRPYRLNWPTSTMI 394
+ T+F DD +L + + KQ+V G+DTR +RL++P T +
Sbjct: 74 VRTRFFDDFILSV---LPEAKQLVFLGAGLDTRAFRLSFPPKTRL 115
>ref|NP_215408.1| hypothetical protein Rv0893c [Mycobacterium tuberculosis
H37Rv]|gi|15840312|ref|NP_335349.1| conserved
hypothetical protein [Mycobacterium tuberculosis
CDC1551]|gi|1731386|sp|Q10552|Y893_MYCTU Hypothetical
protein Rv0893c|gi|7476547|pir||B70782 hypothetical
protein Rv0893c - Mycobacterium tuberculosis (strain
H37RV)|gi|1314032|emb|CAA97399.1| hypothetical protein
Rv0893c [Mycobacterium tuberculosis
H37Rv]|gi|13880474|gb|AAK45163.1| conserved hypothetical
protein [Mycobacterium tuberculosis CDC1551]
Length = 325
Score = 48.1 bits (113), Expect = 2e-05
Identities = 34/108 (31%), Positives = 50/108 (45%), Gaps = 16/108 (14%)
Frame = +2
Query: 119 SALVSASHRLRETNRTEPLFIDPYAACF---------------LPPYTKKDLDIHEQQQH 253
+ L+ A+ R ET + +PL IDPYA F LP + D E +
Sbjct: 17 TGLLVAAARALETQKADPLAIDPYAEVFCRAAGGEWADVLDGKLPDHYLTTGDFGEHFVN 76
Query: 254 YCLA-TKFIDDKLLEIAKRIDGLKQVVLFTDGMDTRPYRLNWPTSTMI 394
+ A T++ D+ G+KQVV+ G+D+R +RL WP T I
Sbjct: 77 FQGARTRYFDEYFSRATAA--GMKQVVILAAGLDSRAFRLQWPIGTTI 122
>ref|NP_625566.1| putative secreted protein [Streptomyces coelicolor
A3(2)]|gi|9368927|emb|CAB99159.1| putative secreted
protein [Streptomyces coelicolor A3(2)]
Length = 292
Score = 47.4 bits (111), Expect = 4e-05
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Frame = +2
Query: 119 SALVSASHRLRETNRTEPLFIDPYAACFL--------PPYTKKDLDIHEQQQHYCLATKF 274
+AL +A+ E R P+ DP+AA FL PP + Q + T+F
Sbjct: 24 AALWTAAAHAAECLRPAPIVRDPWAADFLHAAGFDGGPPGDGPLQRLLPDWQ--VVRTRF 81
Query: 275 IDDKLLEIAKRIDGLKQVVLFTDGMDTRPYRLNWPTSTMI 394
DD L A+ G +QVVL G+DTR +RL+WPT +
Sbjct: 82 FDDYALAAAR--SGCRQVVLLGAGLDTRAFRLDWPTGVHV 119
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 110
effective length of database: 281,893,481
effective search space used: 6765443544
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)