BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.055.Contig1
(1148 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568682.1| Expressed protein; protein id: At5g47435.1... 654 0.0
ref|NP_193467.1| phosphoribosylglycinamide formyltransferas... 554 e-156
pir||H71442 probable formyltransferase purU - Arabidopsis t... 480 e-134
ref|NP_214247.1| formyltetrahydrofolate deformylase [Aquife... 233 5e-60
ref|NP_253004.1| formyltetrahydrofolate deformylase [Pseudo... 207 2e-52
>ref|NP_568682.1| Expressed protein; protein id: At5g47435.1, supported by cDNA:
gi_16648926, supported by cDNA: gi_20148260 [Arabidopsis
thaliana]|gi|16648927|gb|AAL24315.1|
formyltetrahydrofolate deformylase-like [Arabidopsis
thaliana]|gi|20148261|gb|AAM10021.1|
formyltetrahydrofolate deformylase-like [Arabidopsis
thaliana]|gi|26450267|dbj|BAC42250.1| unknown protein
[Arabidopsis thaliana]
Length = 323
Score = 654 bits (1686), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Frame = +3
Query: 78 MIRRITERASGFAKNIPILKSSRFHGESLDSSVSPVLIPGVHVFHCQDAVGIVAKLSDCI 257
MIRRITERASGFAKNIPILKSSRFHGESLDSSVSPVLIPGVHVFHCQDAVGIVAKLSDCI
Sbjct: 1 MIRRITERASGFAKNIPILKSSRFHGESLDSSVSPVLIPGVHVFHCQDAVGIVAKLSDCI 60
Query: 258 AAKGGNILGYDVFVPENNNVFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVVRVP 437
AAKGGNILGYDVFVPENNNVFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVVRVP
Sbjct: 61 AAKGGNILGYDVFVPENNNVFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVVRVP 120
Query: 438 SIDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISNHERASNTHVMRFLERHGIP 617
SIDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISNHERASNTHVMRFLERHGIP
Sbjct: 121 SIDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISNHERASNTHVMRFLERHGIP 180
Query: 618 YHYVSTTKENKREDDILELVKDTDFLVLARYMQILSGNFLKGYGKDVINIHHGLLPSFKG 797
YHYVSTTKENKREDDILELVKDTDFLVLARYMQILSGNFLKGYGKDVINIHHGLLPSFKG
Sbjct: 181 YHYVSTTKENKREDDILELVKDTDFLVLARYMQILSGNFLKGYGKDVINIHHGLLPSFKG 240
Query: 798 GYPAKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVESVSHRDNLRSFVQKSEDLEKKCL 977
GYPAKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVESVSHRDNLRSFVQKSEDLEKKCL
Sbjct: 241 GYPAKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVESVSHRDNLRSFVQKSEDLEKKCL 300
Query: 978 TRAIKSYCELRVLPYGTNKTVVF 1046
TRAIKSYCELRVLPYGTNKTVVF
Sbjct: 301 TRAIKSYCELRVLPYGTNKTVVF 323
>ref|NP_193467.1| phosphoribosylglycinamide formyltransferase-like protein; protein id:
At4g17360.1 [Arabidopsis thaliana]
Length = 328
Score = 554 bits (1427), Expect = e-156
Identities = 269/304 (88%), Positives = 285/304 (93%)
Frame = +3
Query: 135 KSSRFHGESLDSSVSPVLIPGVHVFHCQDAVGIVAKLSDCIAAKGGNILGYDVFVPENNN 314
KSS+FHGESLDSSVSP+LIPG HVFHC D VGIVAKLSDCIAAKGGNILGYDV VPEN N
Sbjct: 25 KSSQFHGESLDSSVSPLLIPGFHVFHCPDVVGIVAKLSDCIAAKGGNILGYDVLVPENKN 84
Query: 315 VFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVVRVPSIDPKYKIALLLSKQDHCL 494
VFYSRSEFIFDPVKWPR Q+DEDFQTIAQ++ AL+SVVRVPS+DPKYKIALLLSKQDHCL
Sbjct: 85 VFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSSVVRVPSLDPKYKIALLLSKQDHCL 144
Query: 495 VEMLHKWQDGKLPVDITCVISNHERASNTHVMRFLERHGIPYHYVSTTKENKREDDILEL 674
VEMLHKWQDGKLPVDITCVISNHERA NTHVMRFL+RHGI YHY+ TT +NK E++ILEL
Sbjct: 145 VEMLHKWQDGKLPVDITCVISNHERAPNTHVMRFLQRHGISYHYLPTTDQNKIEEEILEL 204
Query: 675 VKDTDFLVLARYMQILSGNFLKGYGKDVINIHHGLLPSFKGGYPAKQAFDAGVKLIGATS 854
VK TDFLVLARYMQ+LSGNFLKGYGKDVINIHHGLLPSFKG P KQAFDAGVKLIGAT+
Sbjct: 205 VKGTDFLVLARYMQLLSGNFLKGYGKDVINIHHGLLPSFKGRNPVKQAFDAGVKLIGATT 264
Query: 855 HFVTEELDSGPIIEQMVESVSHRDNLRSFVQKSEDLEKKCLTRAIKSYCELRVLPYGTNK 1034
HFVTEELDSGPIIEQMVE VSHRDNLRSFVQKSEDLEKKCL +AIKSYCELRVLPYGT +
Sbjct: 265 HFVTEELDSGPIIEQMVERVSHRDNLRSFVQKSEDLEKKCLMKAIKSYCELRVLPYGTQR 324
Query: 1035 TVVF 1046
TVVF
Sbjct: 325 TVVF 328
>pir||H71442 probable formyltransferase purU - Arabidopsis
thaliana|gi|2245095|emb|CAB10517.1| formyltransferase
purU homolog [Arabidopsis
thaliana]|gi|7268488|emb|CAB78739.1| formyltransferase
purU homolog [Arabidopsis thaliana]
Length = 295
Score = 480 bits (1235), Expect = e-134
Identities = 236/275 (85%), Positives = 250/275 (90%), Gaps = 9/275 (3%)
Frame = +3
Query: 249 DCIAAKGGNILGYDVFVPENNNVFYSRSEFIFDPVKWPRSQVDEDFQTIAQRYGALNSVV 428
DCIAAKGGNILGYDV VPEN NVFYSRSEFIFDPVKWPR Q+DEDFQTIAQ++ AL+SVV
Sbjct: 21 DCIAAKGGNILGYDVLVPENKNVFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSSVV 80
Query: 429 RVPSIDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVIS---------NHERASNT 581
RVPS+DPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVIS NHERA NT
Sbjct: 81 RVPSLDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISDSGIFGVFSNHERAPNT 140
Query: 582 HVMRFLERHGIPYHYVSTTKENKREDDILELVKDTDFLVLARYMQILSGNFLKGYGKDVI 761
HVMRFL+RHGI YHY+ TT +NK E++ILELVK TDFLVLARYMQ+LSGNFLKGYGKDVI
Sbjct: 141 HVMRFLQRHGISYHYLPTTDQNKIEEEILELVKGTDFLVLARYMQLLSGNFLKGYGKDVI 200
Query: 762 NIHHGLLPSFKGGYPAKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVESVSHRDNLRSF 941
NIHHGLLPSFKG P KQAFDAGVKLIGAT+HFVTEELDSGPIIEQMVE VSHRDNLRSF
Sbjct: 201 NIHHGLLPSFKGRNPVKQAFDAGVKLIGATTHFVTEELDSGPIIEQMVERVSHRDNLRSF 260
Query: 942 VQKSEDLEKKCLTRAIKSYCELRVLPYGTNKTVVF 1046
VQKSEDLEKKCL +AIKSYCELRVLPYGT +TVVF
Sbjct: 261 VQKSEDLEKKCLMKAIKSYCELRVLPYGTQRTVVF 295
>ref|NP_214247.1| formyltetrahydrofolate deformylase [Aquifex
aeolicus]|gi|7433562|pir||G70456 formyltetrahydrofolate
deformylase - Aquifex aeolicus|gi|2984098|gb|AAC07636.1|
formyltetrahydrofolate deformylase [Aquifex aeolicus]
Length = 283
Score = 233 bits (593), Expect = 5e-60
Identities = 123/282 (43%), Positives = 185/282 (64%), Gaps = 4/282 (1%)
Frame = +3
Query: 213 CQDAVGIVAKLSDCIAAKGGNILGYDVFVPENNNVFYSRSEFIFDPVKWPRSQVDEDFQT 392
C D G+V ++S IA GGNI+ +D + E F +R E+ + K PR +++ +F+
Sbjct: 10 CPDRKGLVKEISSFIADNGGNIVSFDQHIDEQTKTFLARVEWSLEDFKIPREKIENEFKK 69
Query: 393 IAQRYGALNSVVRVPSIDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISNHERA 572
+AQ++ ++N ++ D K+A+ +SKQ+HC +++H++ G+L ++ VISNHE+A
Sbjct: 70 VAQKF-SMN--FQISFSDYVKKVAIFVSKQEHCFYDLMHRFYSGELKGEVKLVISNHEKA 126
Query: 573 SNTHVMRFLERHGIPYHYVSTTKENKREDDI--LELVKD--TDFLVLARYMQILSGNFLK 740
T E G+P++++ TKENK E + LEL+K+ + +VLARYMQILS F+K
Sbjct: 127 RKT-----AEFFGVPFYHIPKTKENKLEAEKRELELLKEYGVELVVLARYMQILSPKFVK 181
Query: 741 GYGKDVINIHHGLLPSFKGGYPAKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVESVSH 920
Y +INIHH LP+F G P ++AF GVK+IGAT+H+VTEELD GPIIEQ V VSH
Sbjct: 182 EYENKIINIHHSFLPAFPGAKPYERAFGKGVKIIGATAHYVTEELDEGPIIEQDVVRVSH 241
Query: 921 RDNLRSFVQKSEDLEKKCLTRAIKSYCELRVLPYGTNKTVVF 1046
+D+L F++K +D+EK L RA+K + E ++L Y KTVVF
Sbjct: 242 KDSLEDFIRKGKDIEKVVLARAVKWHLEDKILVY-NGKTVVF 282
>ref|NP_253004.1| formyltetrahydrofolate deformylase [Pseudomonas aeruginosa
PA01]|gi|11348559|pir||C83105 formyltetrahydrofolate
deformylase PA4314 [imported] - Pseudomonas aeruginosa
(strain PAO1)|gi|9950538|gb|AAG07702.1|AE004848_1
formyltetrahydrofolate deformylase [Pseudomonas
aeruginosa PA01]
Length = 283
Score = 207 bits (528), Expect = 2e-52
Identities = 120/285 (42%), Positives = 168/285 (58%), Gaps = 4/285 (1%)
Frame = +3
Query: 204 VFHCQDAVGIVAKLSDCIAAKGGNILGYDVFVPENNNVFYSRSEFIFDPVKWPRSQVDED 383
V C D VGIVAK+S+ +A G I +N F+ R E D + + +
Sbjct: 7 VIACPDGVGIVAKVSNFLATYNGWITEASHHSDNDNGWFFMRHEIRADSLPFDLDGFRQA 66
Query: 384 FQTIAQRYGALNSVVRVPSIDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISNH 563
F IA+ + + R+ + K ++ L+ SK+ HCL ++LH+W G+L +I CVI+NH
Sbjct: 67 FAPIAREF---SMEWRITDSEVKKRVVLMASKESHCLADLLHRWHSGELDCEIPCVIANH 123
Query: 564 ERASNTHVMRFLERHGIPYHYVSTTKENKRE--DDILELVKD--TDFLVLARYMQILSGN 731
+ + +E HGIPY +V ++K+ D++ L+ + D +VLARYMQIL +
Sbjct: 124 D-----DLRSMVEWHGIPYFHVPVDPQDKQPAFDEVSRLIDEHGADCIVLARYMQILPPD 178
Query: 732 FLKGYGKDVINIHHGLLPSFKGGYPAKQAFDAGVKLIGATSHFVTEELDSGPIIEQMVES 911
+ Y VINIHH LPSF G P QA GVKLIGATSH+VTEELD+GPIIEQ V
Sbjct: 179 LCRKYAHQVINIHHSFLPSFIGAKPYHQASKRGVKLIGATSHYVTEELDAGPIIEQDVVR 238
Query: 912 VSHRDNLRSFVQKSEDLEKKCLTRAIKSYCELRVLPYGTNKTVVF 1046
V+HRDN+ V+ +D+EK L R ++ + E RVL +G NKTVVF
Sbjct: 239 VTHRDNVEDMVRLGKDVEKLVLARGLRYHLEDRVLVHG-NKTVVF 282
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 125
effective length of database: 261,807,791
effective search space used: 67284602287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)