BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AI995292.x
         (434 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK59515.1|  unknown protein [Arabidopsis thaliana]|gi|23...    73   9e-13
sp|Q8UVR5|BA1A_XENLA  ATP-utilizing chromatin assembly and r...    32   1.3  
ref|NP_692294.1|  carbon starvation-induced protein [Oceanob...    32   2.2  
ref|NP_181061.1|  similar to mammalian MHC III region protei...    31   3.8  
ref|XP_222795.1|  similar to involucrin [Rattus norvegicus]        30   8.5  

>gb|AAK59515.1| unknown protein [Arabidopsis thaliana]|gi|23296532|gb|AAN13120.1|
           unknown protein [Arabidopsis thaliana]
          Length = 108

 Score = 72.8 bits (177), Expect = 9e-13
 Identities = 34/35 (97%), Positives = 35/35 (99%)
 Frame = -3

Query: 258 ILAVSGGFGVFRLLLNRSAMNGDEESSIHVFNFIC 154
           +LAVSGGFGVFRLLLNRSAMNGDEESSIHVFNFIC
Sbjct: 74  VLAVSGGFGVFRLLLNRSAMNGDEESSIHVFNFIC 108



>sp|Q8UVR5|BA1A_XENLA ATP-utilizing chromatin assembly and remodely factor 1
           (xACF1)|gi|18139834|gb|AAL60160.1|AF412332_1
           ATP-utilizing chromatin assembly factor 1 [Xenopus
           laevis]
          Length = 627

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 23/74 (31%), Positives = 31/74 (41%)
 Frame = +2

Query: 185 SSSPFIADLFSNNRKTPKPPETARICKLLLPEWCRPRRR*GSHRCQKKASQLR*SSQRCQ 364
           +SSPF    FS +   P PP      + LLP    P+ + G  R     S L   ++R  
Sbjct: 440 ASSPFAFRPFSLDSNEPTPPGRKPRSQSLLPSQAEPKGK-GKKRLSGDISSLEQGNRRSS 498

Query: 365 TRAHYVRNMSLXNQ 406
            R H V  +S   Q
Sbjct: 499 GRHHGVHELSACEQ 512



>ref|NP_692294.1| carbon starvation-induced protein [Oceanobacillus
           iheyensis]|gi|22777055|dbj|BAC13329.1| carbon
           starvation-induced protein [Oceanobacillus iheyensis]
          Length = 577

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
 Frame = -1

Query: 194 VTKNHLSTS-----STLFVSIPRG---FAVGNYLAYFLKG----LCFSIGLFSLGLWL 57
           +TK H++TS     ST  V IP G   F  G YL + L G    L  +I LF + +WL
Sbjct: 443 LTKTHVATSVAVLSSTALVLIPEGPNGFGSGGYLIWPLFGTANQLLAAISLFLISIWL 500



>ref|NP_181061.1| similar to mammalian MHC III region protein G9a; protein id:
           At2g35160.1, supported by cDNA: gi_13517750, supported
           by cDNA: gi_17065317 [Arabidopsis
           thaliana]|gi|25408359|pir||D84765 similar to mammalian
           MHC III region protein G9a [imported] - Arabidopsis
           thaliana|gi|3668088|gb|AAC61820.1| similar to mammalian
           MHC III region protein G9a [Arabidopsis
           thaliana]|gi|13517751|gb|AAK28970.1|AF344448_1 SUVH5
           [Arabidopsis thaliana]|gi|17065318|gb|AAL32813.1|
           putative SET-domain protein [Arabidopsis
           thaliana]|gi|28059227|gb|AAO30037.1| putative SET-domain
           protein [Arabidopsis thaliana]
          Length = 794

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 218 NNRKTPKPPETARICKLLLPEWCRP 292
           NN    KPP      K++ P+WCRP
Sbjct: 557 NNLDDEKPPPFIYTAKMIYPDWCRP 581



>ref|XP_222795.1| similar to involucrin [Rattus norvegicus]
          Length = 173

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/49 (32%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
 Frame = +2

Query: 293 RRR*GSHRCQKKASQLR*SSQRCQTRAHYVRNMS--LXNQTRRQRFDRK 433
           ++R  S +CQK+ S+ R +S++CQ      R  S     +T +QR +R+
Sbjct: 91  KQRRNSEQCQKETSKQRRNSEQCQKETSKQRRNSEQCQKETSKQRHNRQ 139



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 120
effective length of database: 268,503,021
effective search space used: 6444072504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)