BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.005.Contig1
         (629 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM61501.1|  unknown [Arabidopsis thaliana]                    161   7e-39
gb|ZP_00061693.1|  hypothetical protein [Clostridium thermoc...    39   0.054
ref|NP_421130.1|  TonB protein, putative [Caulobacter cresce...    36   0.46 
gb|EAA11833.1|  agCP5652 [Anopheles gambiae str. PEST]             35   0.78 
gb|EAA12042.1|  agCP9084 [Anopheles gambiae str. PEST]             35   1.0  

>gb|AAM61501.1| unknown [Arabidopsis thaliana]
          Length = 76

 Score =  161 bits (407), Expect = 7e-39
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 81  MRLGGFRRATWWLTADLFGSAMANRDSRLIRVVGATVPVSLAIWFPLVRIDLDWSREGCV 260
           MRLGGFRRATWWLTADLFGSAMANRDSRLIRVVGATVPVSLAIWFPLVRIDLDWSREGCV
Sbjct: 1   MRLGGFRRATWWLTADLFGSAMANRDSRLIRVVGATVPVSLAIWFPLVRIDLDWSREGCV 60

Query: 261 VHRTTEGGYILHSSIC 308
           VHRTTEGGYILHSSIC
Sbjct: 61  VHRTTEGGYILHSSIC 76



>gb|ZP_00061693.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
          Length = 642

 Score = 38.9 bits (89), Expect = 0.054
 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
 Frame = -3

Query: 555 SETPVMAEI*NE*PTGKQNLPPTRSGEYKVHCVAAT---SPETTFDRSTQFPSPIRFQ*R 385
           S TP + E     PT ++ LP     E+     + T   SPE+T   ST FPSP+ F   
Sbjct: 48  SLTPAVTETPLATPT-QETLPSPSPSEFSTPTPSFTPDASPEST---STPFPSPLPFPMP 103

Query: 384 AIPATNLPE*VKTPTNRGPPPIPLPSKSMNARCNPLPSSDEQRTLPE 244
              +T  P+   T T   P P P+P+ S+    +P PS  E  + PE
Sbjct: 104 DSTSTPTPDPDSTSTPT-PTPTPIPTPSV----SPSPSDTEAPSRPE 145



>ref|NP_421130.1| TonB protein, putative [Caulobacter crescentus
           CB15]|gi|25399787|pir||F87537 TonB protein, probable
           [imported] - Caulobacter
           crescentus|gi|13423850|gb|AAK24298.1| TonB protein,
           putative [Caulobacter crescentus CB15]
          Length = 240

 Score = 35.8 bits (81), Expect = 0.46
 Identities = 33/102 (32%), Positives = 42/102 (40%), Gaps = 6/102 (5%)
 Frame = -3

Query: 516 PTGKQNLPPTRSGEYKVHCVAATSPETTFDRSTQFPSPIRFQ*RAIPA---TNLPE*VKT 346
           P+     PP  +   K+H  A T  ET        P P+    R IPA   T  P     
Sbjct: 76  PSPPTEKPPPAAAAPKLHIPAPTPLET--------PPPLFADPRIIPAGPTTTGPVTTLA 127

Query: 345 PTNRGPPPIPLPSKSMNARCN--PLPSSDEQ-RTLPETSQDR 229
           P    PP  P P   +  R N   +PS+DE  R  PE++Q R
Sbjct: 128 PAATTPPSPPQPPPKVITRANWQRIPSADEMARYYPESAQRR 169



>gb|EAA11833.1| agCP5652 [Anopheles gambiae str. PEST]
          Length = 501

 Score = 35.0 bits (79), Expect = 0.78
 Identities = 33/101 (32%), Positives = 45/101 (43%), Gaps = 5/101 (4%)
 Frame = -3

Query: 447 SPETTFDRSTQFPS--PIRFQ*RAIPATNLPE*VKTPTNRGPPPIPLPSKSMNARCNPLP 274
           SP  T +     PS  P      A PAT LP    T     PPP P P  S+  + N   
Sbjct: 80  SPTATAEPMQTVPSVAPAALPPVAPPATPLPPPTPTTVTLPPPPTPNPVTSILQQLNSNA 139

Query: 273 S-SDEQRTLPET--SQDRSGLVETKSRD*QGRWLRQP*LAL 160
           S +D++R L  T  ++ +S   +  ++D  GRW     LAL
Sbjct: 140 SVNDKKRALKNTKRTKKKSASQQVAAKD-LGRWKPMDDLAL 179



>gb|EAA12042.1| agCP9084 [Anopheles gambiae str. PEST]
          Length = 377

 Score = 34.7 bits (78), Expect = 1.0
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
 Frame = -2

Query: 283 PPSVVR*TTHPSRDQSRSIRTSGNQIARLTGTVAPTTLISLESRLAIADPNRSAVNHQVA 104
           PP  V   +  SRDQ+++ R +G Q  ++  T    TL ++  R A+++    A +H   
Sbjct: 19  PPFQVAIKSTNSRDQNQNNRNAGQQAKQMLLTHGTHTLHAVAGRTALSELVLRAASHHTW 78

Query: 103 RRNPPSRIATSA------ASRRKSPQAAALYNTG 20
             + P R+A +A       +R ++P  +  Y  G
Sbjct: 79  FGSAPGRLACAAPAAWGVRAREQTPGISLAYYCG 112



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 24677481283
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)