BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU228827.r
(425 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178148.1| putative oxidoreductase; protein id: At1g8... 152 2e-40
ref|NP_173007.1| hypothetical protein; protein id: At1g1554... 84 7e-20
ref|NP_175688.1| putative oxidoreductase; protein id: At1g5... 76 8e-14
ref|NP_175689.1| putative oxidoreductase; protein id: At1g5... 65 1e-12
ref|NP_175691.1| putative oxidoreductase; protein id: At1g5... 59 1e-08
>ref|NP_178148.1| putative oxidoreductase; protein id: At1g80320.1 [Arabidopsis
thaliana]|gi|25406655|pir||G96834 probable
oxidoreductase, 24302-25416 [imported] - Arabidopsis
thaliana|gi|12324982|gb|AAG52438.1|AC018848_9 putative
oxidoreductase; 24302-25416 [Arabidopsis thaliana]
Length = 320
Score = 152 bits (385), Expect(2) = 2e-40
Identities = 73/78 (93%), Positives = 74/78 (94%)
Frame = -1
Query: 404 KGMLPQVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYIN 225
K +VVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYIN
Sbjct: 243 KACYHKVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYIN 302
Query: 224 SLKKSSEDLLQIYCGVTP 171
SLKKSSEDLLQIYCGVTP
Sbjct: 303 SLKKSSEDLLQIYCGVTP 320
Score = 33.5 bits (75), Expect(2) = 2e-40
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -2
Query: 424 AWSNDRIKACYHR 386
AWSNDRIKACYH+
Sbjct: 236 AWSNDRIKACYHK 248
>ref|NP_173007.1| hypothetical protein; protein id: At1g15540.1 [Arabidopsis
thaliana]|gi|25518417|pir||C86289 hypothetical protein
T16N11.5 - Arabidopsis
thaliana|gi|8072391|gb|AAF71979.1|AC013453_4 Similar to
oxygenases [Arabidopsis thaliana]
Length = 320
Score = 83.6 bits (205), Expect(2) = 7e-20
Identities = 40/76 (52%), Positives = 51/76 (66%)
Frame = -1
Query: 404 KGMLPQVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYIN 225
K +V M + E+RYSLGFFSF +G I TPEE+VD HPL YNPF HDGLL +YE+
Sbjct: 245 KACYHKVEMESVEMRYSLGFFSFQEGMISTPEEMVDKDHPLAYNPFHHDGLLEYYETLEV 304
Query: 224 SLKKSSEDLLQIYCGV 177
L K+ + + YCG+
Sbjct: 305 HL-KAHRTMTKAYCGI 319
Score = 33.5 bits (75), Expect(2) = 7e-20
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -2
Query: 424 AWSNDRIKACYHR 386
AWSNDRIKACYH+
Sbjct: 238 AWSNDRIKACYHK 250
>ref|NP_175688.1| putative oxidoreductase; protein id: At1g52790.1 [Arabidopsis
thaliana]|gi|25405603|pir||A96569 probable
oxidoreductase, 32373-31266 [imported] - Arabidopsis
thaliana|gi|12324652|gb|AAG52288.1|AC019018_25 putative
oxidoreductase; 32373-31266 [Arabidopsis thaliana]
Length = 310
Score = 76.3 bits (186), Expect = 8e-14
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = -1
Query: 389 QVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYINSLKKS 210
QV++S + RYSLG F+F+ GT++ PEEL+D QHPL Y PF+H GLLRFY +
Sbjct: 243 QVLVSGETDRYSLGMFAFNNGTLQVPEELIDHQHPLMYKPFDHLGLLRFYRT---DTGYK 299
Query: 209 SEDLLQIYCG 180
SE ++ YCG
Sbjct: 300 SECPIKAYCG 309
>ref|NP_175689.1| putative oxidoreductase; protein id: At1g52800.1 [Arabidopsis
thaliana]|gi|25285707|pir||B96569 probable
oxidoreductase, 33116-34434 [imported] - Arabidopsis
thaliana|gi|12324655|gb|AAG52291.1|AC019018_28 putative
oxidoreductase; 33116-34434 [Arabidopsis thaliana]
Length = 314
Score = 65.1 bits (157), Expect(2) = 1e-12
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = -1
Query: 389 QVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYINSLKKS 210
+V M D+ RY+LG FSF + PEELVDD+HPL Y PF++ L+ FY + +
Sbjct: 247 RVTMEGDKTRYTLGLFSFLTDLVSIPEELVDDKHPLMYKPFDNIALINFYTT---KEGRE 303
Query: 209 SEDLLQIYCGV 177
+ L+ YCG+
Sbjct: 304 ANSTLKAYCGI 314
Score = 27.3 bits (59), Expect(2) = 1e-12
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 421 WSNDRIKACYHR 386
WSNDRI++C HR
Sbjct: 236 WSNDRIRSCEHR 247
>ref|NP_175691.1| putative oxidoreductase; protein id: At1g52820.1 [Arabidopsis
thaliana]|gi|25285705|pir||D96569 probable
oxidoreductase, 38288-39393 [imported] - Arabidopsis
thaliana|gi|12324633|gb|AAG52269.1|AC019018_6 putative
oxidoreductase; 38288-39393 [Arabidopsis thaliana]
Length = 317
Score = 58.9 bits (141), Expect = 1e-08
Identities = 28/73 (38%), Positives = 44/73 (59%), Gaps = 2/73 (2%)
Frame = -1
Query: 389 QVVMSADEIRYSLGFFSFHKG--TIRTPEELVDDQHPLRYNPFEHDGLLRFYESYINSLK 216
+V+M+ E RYSLG FS K + +P+ELVD++HP + PF+H + F + Y
Sbjct: 248 RVMMTGTETRYSLGLFSIPKAGHIVSSPDELVDEEHPRLFKPFDH---VEFLQFYYTEAG 304
Query: 215 KSSEDLLQIYCGV 177
+ S+ L+ YCG+
Sbjct: 305 QRSQSALKTYCGI 317
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 6540483816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)