BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU228827.r
         (425 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178148.1|  putative oxidoreductase; protein id: At1g8...   152   2e-40
ref|NP_173007.1|  hypothetical protein; protein id: At1g1554...    84   7e-20
ref|NP_175688.1|  putative oxidoreductase; protein id: At1g5...    76   8e-14
ref|NP_175689.1|  putative oxidoreductase; protein id: At1g5...    65   1e-12
ref|NP_175691.1|  putative oxidoreductase; protein id: At1g5...    59   1e-08
>ref|NP_178148.1| putative oxidoreductase; protein id: At1g80320.1 [Arabidopsis
           thaliana]|gi|25406655|pir||G96834 probable
           oxidoreductase, 24302-25416 [imported] - Arabidopsis
           thaliana|gi|12324982|gb|AAG52438.1|AC018848_9 putative
           oxidoreductase; 24302-25416 [Arabidopsis thaliana]
          Length = 320

 Score =  152 bits (385), Expect(2) = 2e-40
 Identities = 73/78 (93%), Positives = 74/78 (94%)
 Frame = -1

Query: 404 KGMLPQVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYIN 225
           K    +VVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYIN
Sbjct: 243 KACYHKVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYIN 302

Query: 224 SLKKSSEDLLQIYCGVTP 171
           SLKKSSEDLLQIYCGVTP
Sbjct: 303 SLKKSSEDLLQIYCGVTP 320

 Score = 33.5 bits (75), Expect(2) = 2e-40
 Identities = 12/13 (92%), Positives = 13/13 (99%)
 Frame = -2

Query: 424 AWSNDRIKACYHR 386
           AWSNDRIKACYH+
Sbjct: 236 AWSNDRIKACYHK 248
>ref|NP_173007.1| hypothetical protein; protein id: At1g15540.1 [Arabidopsis
           thaliana]|gi|25518417|pir||C86289 hypothetical protein
           T16N11.5 - Arabidopsis
           thaliana|gi|8072391|gb|AAF71979.1|AC013453_4 Similar to
           oxygenases [Arabidopsis thaliana]
          Length = 320

 Score = 83.6 bits (205), Expect(2) = 7e-20
 Identities = 40/76 (52%), Positives = 51/76 (66%)
 Frame = -1

Query: 404 KGMLPQVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYIN 225
           K    +V M + E+RYSLGFFSF +G I TPEE+VD  HPL YNPF HDGLL +YE+   
Sbjct: 245 KACYHKVEMESVEMRYSLGFFSFQEGMISTPEEMVDKDHPLAYNPFHHDGLLEYYETLEV 304

Query: 224 SLKKSSEDLLQIYCGV 177
            L K+   + + YCG+
Sbjct: 305 HL-KAHRTMTKAYCGI 319

 Score = 33.5 bits (75), Expect(2) = 7e-20
 Identities = 12/13 (92%), Positives = 13/13 (99%)
 Frame = -2

Query: 424 AWSNDRIKACYHR 386
           AWSNDRIKACYH+
Sbjct: 238 AWSNDRIKACYHK 250
>ref|NP_175688.1| putative oxidoreductase; protein id: At1g52790.1 [Arabidopsis
           thaliana]|gi|25405603|pir||A96569 probable
           oxidoreductase, 32373-31266 [imported] - Arabidopsis
           thaliana|gi|12324652|gb|AAG52288.1|AC019018_25 putative
           oxidoreductase; 32373-31266 [Arabidopsis thaliana]
          Length = 310

 Score = 76.3 bits (186), Expect = 8e-14
 Identities = 36/70 (51%), Positives = 48/70 (68%)
 Frame = -1

Query: 389 QVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYINSLKKS 210
           QV++S +  RYSLG F+F+ GT++ PEEL+D QHPL Y PF+H GLLRFY +        
Sbjct: 243 QVLVSGETDRYSLGMFAFNNGTLQVPEELIDHQHPLMYKPFDHLGLLRFYRT---DTGYK 299

Query: 209 SEDLLQIYCG 180
           SE  ++ YCG
Sbjct: 300 SECPIKAYCG 309
>ref|NP_175689.1| putative oxidoreductase; protein id: At1g52800.1 [Arabidopsis
           thaliana]|gi|25285707|pir||B96569 probable
           oxidoreductase, 33116-34434 [imported] - Arabidopsis
           thaliana|gi|12324655|gb|AAG52291.1|AC019018_28 putative
           oxidoreductase; 33116-34434 [Arabidopsis thaliana]
          Length = 314

 Score = 65.1 bits (157), Expect(2) = 1e-12
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = -1

Query: 389 QVVMSADEIRYSLGFFSFHKGTIRTPEELVDDQHPLRYNPFEHDGLLRFYESYINSLKKS 210
           +V M  D+ RY+LG FSF    +  PEELVDD+HPL Y PF++  L+ FY +      + 
Sbjct: 247 RVTMEGDKTRYTLGLFSFLTDLVSIPEELVDDKHPLMYKPFDNIALINFYTT---KEGRE 303

Query: 209 SEDLLQIYCGV 177
           +   L+ YCG+
Sbjct: 304 ANSTLKAYCGI 314

 Score = 27.3 bits (59), Expect(2) = 1e-12
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 421 WSNDRIKACYHR 386
           WSNDRI++C HR
Sbjct: 236 WSNDRIRSCEHR 247
>ref|NP_175691.1| putative oxidoreductase; protein id: At1g52820.1 [Arabidopsis
           thaliana]|gi|25285705|pir||D96569 probable
           oxidoreductase, 38288-39393 [imported] - Arabidopsis
           thaliana|gi|12324633|gb|AAG52269.1|AC019018_6 putative
           oxidoreductase; 38288-39393 [Arabidopsis thaliana]
          Length = 317

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 28/73 (38%), Positives = 44/73 (59%), Gaps = 2/73 (2%)
 Frame = -1

Query: 389 QVVMSADEIRYSLGFFSFHKG--TIRTPEELVDDQHPLRYNPFEHDGLLRFYESYINSLK 216
           +V+M+  E RYSLG FS  K    + +P+ELVD++HP  + PF+H   + F + Y     
Sbjct: 248 RVMMTGTETRYSLGLFSIPKAGHIVSSPDELVDEEHPRLFKPFDH---VEFLQFYYTEAG 304

Query: 215 KSSEDLLQIYCGV 177
           + S+  L+ YCG+
Sbjct: 305 QRSQSALKTYCGI 317
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 6540483816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results