BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE037562.f
(839 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175128.1| thioredoxin, putative; protein id: At1g451... 239 4e-62
gb|AAC49356.1| thioredoxin h 239 4e-62
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thali... 211 1e-53
ref|NP_199112.1| thioredoxin (clone GIF1) (pir||S58118); pr... 180 2e-44
gb|AAG35777.1|AF273844_1 thioredoxin-h-like protein 1 [Bras... 165 7e-40
>ref|NP_175128.1| thioredoxin, putative; protein id: At1g45145.1, supported by cDNA:
3236., supported by cDNA: gi_13430629 [Arabidopsis
thaliana]|gi|12643755|sp|Q39241|THH5_ARATH Thioredoxin
H-type 5 (TRX-H-5)|gi|2117425|pir||S58120 thioredoxin
(clone TOUL) - Arabidopsis
thaliana|gi|992966|emb|CAA84613.1| thioredoxin
[Arabidopsis
thaliana]|gi|13430630|gb|AAK25937.1|AF360227_1 putative
thioredoxin [Arabidopsis
thaliana]|gi|14532808|gb|AAK64086.1| putative
thioredoxin [Arabidopsis
thaliana]|gi|21592768|gb|AAM64717.1| thioredoxin,
putative [Arabidopsis
thaliana]|gi|26451125|dbj|BAC42666.1| putative
thioredoxin [Arabidopsis thaliana]
Length = 118
Score = 239 bits (610), Expect = 4e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 50 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 229
MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV
Sbjct: 1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 60
Query: 230 FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 403
FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA
Sbjct: 61 FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 118
>gb|AAC49356.1| thioredoxin h
Length = 119
Score = 239 bits (610), Expect = 4e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 50 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 229
MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV
Sbjct: 1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 60
Query: 230 FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 403
FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA
Sbjct: 61 FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 118
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis
thaliana|gi|7767672|gb|AAF69169.1|AC007915_21 F27F5.21
[Arabidopsis thaliana]
Length = 1023
Score = 211 bits (536), Expect = 1e-53
Identities = 111/142 (78%), Positives = 111/142 (78%), Gaps = 31/142 (21%)
Frame = +2
Query: 50 MAGEGEVIACHTLEVWNEKVKDANESKKL------------------------------- 136
MAGEGEVIACHTLEVWNEKVKDANESKKL
Sbjct: 1 MAGEGEVIACHTLEVWNEKVKDANESKKLGLGLSWLVSLMVNDVRETVAFDPVLVPYLAL 60
Query: 137 IVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKE 316
IVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKE
Sbjct: 61 IVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKE 120
Query: 317 GNIIDRVVGAAKDEINEKLMKH 382
GNIIDRVVGAAKDEINEKLMKH
Sbjct: 121 GNIIDRVVGAAKDEINEKLMKH 142
>ref|NP_199112.1| thioredoxin (clone GIF1) (pir||S58118); protein id: At5g42980.1,
supported by cDNA: 13096., supported by cDNA:
gi_16649000, supported by cDNA: gi_17473620, supported
by cDNA: gi_20259939 [Arabidopsis
thaliana]|gi|18206377|sp|Q42403|THH3_ARATH Thioredoxin
H-type 3 (TRX-H-3)|gi|2117424|pir||S58118 thioredoxin
(clone GIF1) - Arabidopsis
thaliana|gi|992962|emb|CAA84611.1| thioredoxin
[Arabidopsis thaliana]|gi|1388076|gb|AAC49351.1|
thioredoxin h|gi|9758587|dbj|BAB09200.1| thioredoxin
(clone GIF1) [Arabidopsis
thaliana]|gi|16649001|gb|AAL24352.1| thioredoxin (clone
GIF1) [Arabidopsis thaliana]|gi|17473621|gb|AAL38274.1|
thioredoxin (clone GIF1) [Arabidopsis
thaliana]|gi|20259940|gb|AAM13317.1| thioredoxin
[Arabidopsis thaliana]|gi|21386963|gb|AAM47885.1|
thioredoxin clone GIF1 [Arabidopsis
thaliana]|gi|21537330|gb|AAM61671.1| thioredoxin
[Arabidopsis thaliana]
Length = 118
Score = 180 bits (457), Expect = 2e-44
Identities = 87/118 (73%), Positives = 101/118 (84%)
Frame = +2
Query: 50 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 229
MA EGEVIACHT+E W EK+K ANESKKLIVIDFTA+WCPPCRFIAPVFA++AKK +VV
Sbjct: 1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVV 60
Query: 230 FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 403
FFK+DVDEL VA+EFKV+AMPTF+FMKEG I + VVGAAK+EI L KH +VA+A
Sbjct: 61 FFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAAA 118
>gb|AAG35777.1|AF273844_1 thioredoxin-h-like protein 1 [Brassica oleracea var. alboglabra]
Length = 116
Score = 165 bits (418), Expect = 7e-40
Identities = 78/113 (69%), Positives = 92/113 (81%)
Frame = +2
Query: 62 GEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKI 241
GEVIACHT+E WN K+K A ES KLIVIDFTA WCPPCRFIAP+F E+AKK +VVFFK+
Sbjct: 4 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKV 63
Query: 242 DVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVAS 400
DVDEL VAQEF V+AMPTFV+MK +D+VVGAAK+EI KL+KH + A+
Sbjct: 64 DVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQVAAA 116
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 121
effective length of database: 267,163,975
effective search space used: 42211908050
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)