BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.002.Contig1
         (678 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM61350.1|  unknown [Arabidopsis thaliana]                    293   1e-78
ref|NP_564949.1|  Expressed protein; protein id: At1g68875.1...   291   4e-78
ref|NP_703259.1|  asparagine-rich antigen Pfa35-2 [Plasmodiu...    35   0.69 
ref|XP_203475.1|  similar to Heterogeneous nuclear ribonucle...    35   0.90 
gb|AAD42044.1|AF097183_1  unknown [Cryptosporidium parvum]         34   2.0  

>gb|AAM61350.1| unknown [Arabidopsis thaliana]
          Length = 153

 Score =  293 bits (751), Expect = 1e-78
 Identities = 140/153 (91%), Positives = 140/153 (91%)
 Frame = +1

Query: 28  MTELKWICISFSLTLLLSLAVEGAFNINQKWSGGSNFGYEGGFCFPGLCIGGSGGSRVHY 207
           MTELKWICISFSLTLLLSLAVEGAFNINQKWSGGSNFGYEGGFCFPGLCIGGSGGSRVHY
Sbjct: 1   MTELKWICISFSLTLLLSLAVEGAFNINQKWSGGSNFGYEGGFCFPGLCIGGSGGSRVHY 60

Query: 208 GRDHXXXXXXXXXXXXXRETMYCKPLTCYGGSCDALHLHLDKGLYESLIRNTKTAKQSST 387
           GRDH             RETMYCKPLTCYGGSCDALHLHLDKGLYESLIRNTKTAKQSST
Sbjct: 61  GRDHYGGGSQYRGGIGYRETMYCKPLTCYGGSCDALHLHLDKGLYESLIRNTKTAKQSST 120

Query: 388 VDFNMPETLKHNVINNNYEFKMAKEAAMAPQSN 486
           VDFNMPETLKHNVINNNYEFKMAKEAAMAPQSN
Sbjct: 121 VDFNMPETLKHNVINNNYEFKMAKEAAMAPQSN 153



>ref|NP_564949.1| Expressed protein; protein id: At1g68875.1, supported by cDNA:
           11776. [Arabidopsis thaliana]|gi|28393216|gb|AAO42038.1|
           unknown protein [Arabidopsis thaliana]
          Length = 153

 Score =  291 bits (746), Expect = 4e-78
 Identities = 139/153 (90%), Positives = 140/153 (90%)
 Frame = +1

Query: 28  MTELKWICISFSLTLLLSLAVEGAFNINQKWSGGSNFGYEGGFCFPGLCIGGSGGSRVHY 207
           MTELKWICISFSLTLLLSLAVEGAFNINQKWSGGS+FGYEGGFCFPGLCIGGSGGSRVHY
Sbjct: 1   MTELKWICISFSLTLLLSLAVEGAFNINQKWSGGSHFGYEGGFCFPGLCIGGSGGSRVHY 60

Query: 208 GRDHXXXXXXXXXXXXXRETMYCKPLTCYGGSCDALHLHLDKGLYESLIRNTKTAKQSST 387
           GRDH             RETMYCKPLTCYGGSCDALHLHLDKGLYESLIRNTKTAKQSST
Sbjct: 61  GRDHYGGGSQYRGGIGYRETMYCKPLTCYGGSCDALHLHLDKGLYESLIRNTKTAKQSST 120

Query: 388 VDFNMPETLKHNVINNNYEFKMAKEAAMAPQSN 486
           VDFNMPETLKHNVINNNYEFKMAKEAAMAPQSN
Sbjct: 121 VDFNMPETLKHNVINNNYEFKMAKEAAMAPQSN 153



>ref|NP_703259.1| asparagine-rich antigen Pfa35-2 [Plasmodium falciparum
            3D7]|gi|23510631|emb|CAD49016.1| asparagine-rich antigen
            Pfa35-2 [Plasmodium falciparum 3D7]
          Length = 3063

 Score = 35.4 bits (80), Expect = 0.69
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -3

Query: 325  NANGVHHMSHHNKSTVCSTWSLCNQYHLYIDFHHRNGPCHNGLYYHQILQCRDRENRTRP 146
            N+N  ++  HHN +     +   N YH + ++HH N   H+  Y+H      +  N    
Sbjct: 2091 NSNSHYNNYHHNNN-----YHHNNNYHHHNNYHHHNNYHHHNNYHHNNYHGNNHFNNYHH 2145

Query: 145  RNQNYFHQ 122
             N N +++
Sbjct: 2146 NNMNSYNE 2153



>ref|XP_203475.1| similar to Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)
           (D10S102) [Mus musculus]
          Length = 293

 Score = 35.0 bits (79), Expect = 0.90
 Identities = 17/31 (54%), Positives = 18/31 (57%)
 Frame = +1

Query: 124 GGSNFGYEGGFCFPGLCIGGSGGSRVHYGRD 216
           GG NFG+   F   G C GG GGSR  YG D
Sbjct: 148 GGGNFGHGENFGGRGGCGGGGGGSRGSYGGD 178



>gb|AAD42044.1|AF097183_1 unknown [Cryptosporidium parvum]
          Length = 984

 Score = 33.9 bits (76), Expect = 2.0
 Identities = 21/77 (27%), Positives = 29/77 (37%)
 Frame = +1

Query: 148 GGFCFPGLCIGGSGGSRVHYGRDHXXXXXXXXXXXXXRETMYCKPLTCYGGSCDALHLHL 327
           GG C PG C+GGS     H G                 E    +P  C GGSC    +  
Sbjct: 493 GGECKPGKCVGGS----CHSGSCSSTKCVGCTTEVPRLEGCVARPAHCTGGSCSPARVRG 548

Query: 328 DKGLYESLIRNTKTAKQ 378
            + +   ++ N   AK+
Sbjct: 549 ARCVKHEILPNHHCAKE 565



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 119
effective length of database: 269,842,067
effective search space used: 28603259102
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)