BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.014.Contig1
(1524 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564782.1| expressed protein; protein id: At1g61660.1... 707 0.0
gb|AAM62823.1| unknown [Arabidopsis thaliana] 704 0.0
pir||A96642 hypothetical protein T13M11.1 [imported] - Arab... 527 e-148
dbj|BAB02240.1| gene_id:F3H11.2~unknown protein [Arabidopsi... 148 3e-34
ref|NP_188700.1| hypothetical protein; protein id: At3g2064... 148 3e-34
>ref|NP_564782.1| expressed protein; protein id: At1g61660.1, supported by cDNA:
159557., supported by cDNA: gi_14190498 [Arabidopsis
thaliana]|gi|14190499|gb|AAK55730.1|AF380649_1
At1g61660/T13M11_21 [Arabidopsis
thaliana]|gi|21360529|gb|AAM47380.1| At1g61660/T13M11_21
[Arabidopsis thaliana]
Length = 393
Score = 707 bits (1824), Expect = 0.0
Identities = 348/393 (88%), Positives = 348/393 (88%)
Frame = +3
Query: 126 MAEEFKATASICGGGGGAWWNSPRSVMSPSDHFLSPCFGAAITSNDFSSQENHLKSRMTC 305
MAEEFKATASICGGGGGAWWNSPRSVMSPSDHFLSPCFGAAITSNDFSSQENHLKSRMTC
Sbjct: 1 MAEEFKATASICGGGGGAWWNSPRSVMSPSDHFLSPCFGAAITSNDFSSQENHLKSRMTC 60
Query: 306 TDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLGFSSNCSSDWNQTILQEDLNSSFIRSS 485
TDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLGFSSNCSSDWNQTILQEDLNSSFIRSS
Sbjct: 61 TDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLGFSSNCSSDWNQTILQEDLNSSFIRSS 120
Query: 486 QDQDHGQGFLSTTTSPYILNPACXXXXXXXXXXXLIRTFYDPEPSPYNFVSTTSGSINDP 665
QDQDHGQGFLSTTTSPYILNPAC LIRTFYDPEPSPYNFVSTTSGSINDP
Sbjct: 121 QDQDHGQGFLSTTTSPYILNPACSSSPSTSSSSSLIRTFYDPEPSPYNFVSTTSGSINDP 180
Query: 666 QLSWANKTNPHHQVAYGLINSFSNNANSRPFWXXXXXXXXXXXXXXXFVTTPQIISTRLE 845
QLSWANKTNPHHQVAYGLINSFSNNANSRPFW FVTTPQIISTRLE
Sbjct: 181 QLSWANKTNPHHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQIISTRLE 240
Query: 846 DKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPF 1025
DKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPF
Sbjct: 241 DKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPF 300
Query: 1026 GKTDTASVLQEAIEYIKFLHDQVTVLSTPYMXXXXXXXXXXXXXXXXXXXDENENHELRG 1205
GKTDTASVLQEAIEYIKFLHDQVTVLSTPYM DENENHELRG
Sbjct: 301 GKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELRG 360
Query: 1206 HGLCLVPISSTFPVANETTADFWTPTFGGNNFR 1304
HGLCLVPISSTFPVANETTADFWTPTFGGNNFR
Sbjct: 361 HGLCLVPISSTFPVANETTADFWTPTFGGNNFR 393
>gb|AAM62823.1| unknown [Arabidopsis thaliana]
Length = 393
Score = 704 bits (1818), Expect = 0.0
Identities = 347/393 (88%), Positives = 347/393 (88%)
Frame = +3
Query: 126 MAEEFKATASICGGGGGAWWNSPRSVMSPSDHFLSPCFGAAITSNDFSSQENHLKSRMTC 305
MAEEFKATASICGGGG AWWNSPRSVMSPSDHFLSPCFGAAITSNDFSSQENHLKSRMTC
Sbjct: 1 MAEEFKATASICGGGGSAWWNSPRSVMSPSDHFLSPCFGAAITSNDFSSQENHLKSRMTC 60
Query: 306 TDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLGFSSNCSSDWNQTILQEDLNSSFIRSS 485
TDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLGFSSNCSSDWNQTILQEDLNSSFIRSS
Sbjct: 61 TDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLGFSSNCSSDWNQTILQEDLNSSFIRSS 120
Query: 486 QDQDHGQGFLSTTTSPYILNPACXXXXXXXXXXXLIRTFYDPEPSPYNFVSTTSGSINDP 665
QDQDHGQGFLSTTTSPYILNPAC LIRTFYDPEPSPYNFVSTTSGSINDP
Sbjct: 121 QDQDHGQGFLSTTTSPYILNPACSSSPSTSSSSSLIRTFYDPEPSPYNFVSTTSGSINDP 180
Query: 666 QLSWANKTNPHHQVAYGLINSFSNNANSRPFWXXXXXXXXXXXXXXXFVTTPQIISTRLE 845
QLSWANKTNPHHQVAYGLINSFSNNANSRPFW FVTTPQIISTRLE
Sbjct: 181 QLSWANKTNPHHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQIISTRLE 240
Query: 846 DKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPF 1025
DKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPF
Sbjct: 241 DKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPF 300
Query: 1026 GKTDTASVLQEAIEYIKFLHDQVTVLSTPYMXXXXXXXXXXXXXXXXXXXDENENHELRG 1205
GKTDTASVLQEAIEYIKFLHDQVTVLSTPYM DENENHELRG
Sbjct: 301 GKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELRG 360
Query: 1206 HGLCLVPISSTFPVANETTADFWTPTFGGNNFR 1304
HGLCLVPISSTFPVANETTADFWTPTFGGNNFR
Sbjct: 361 HGLCLVPISSTFPVANETTADFWTPTFGGNNFR 393
>pir||A96642 hypothetical protein T13M11.1 [imported] - Arabidopsis
thaliana|gi|4508068|gb|AAD21412.1| 3063
Length = 304
Score = 527 bits (1358), Expect = e-148
Identities = 270/336 (80%), Positives = 271/336 (80%)
Frame = +3
Query: 297 MTCTDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLGFSSNCSSDWNQTILQEDLNSSFI 476
MTCTDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLG QEDLNSSFI
Sbjct: 1 MTCTDNNNIVFGQREADSDSGGSTVTMDSTLQMMGLG--------------QEDLNSSFI 46
Query: 477 RSSQDQDHGQGFLSTTTSPYILNPACXXXXXXXXXXXLIRTFYDPEPSPYNFVSTTSGSI 656
RSSQDQDHGQGFLSTTTSPYILNPAC LIRTFYDPEPSPYNFVSTTSGSI
Sbjct: 47 RSSQDQDHGQGFLSTTTSPYILNPACSSSPSTSSSSSLIRTFYDPEPSPYNFVSTTSGSI 106
Query: 657 NDPQLSWANKTNPHHQVAYGLINSFSNNANSRPFWXXXXXXXXXXXXXXXFVTTPQIIST 836
NDPQLSWANKTNPHHQVAYGLINSFSNNANSRPFW FVTTPQIIST
Sbjct: 107 NDPQLSWANKTNPHHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQIIST 166
Query: 837 RLEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLV 1016
RLEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLV
Sbjct: 167 RLEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLV 226
Query: 1017 SPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMXXXXXXXXXXXXXXXXXXXDENENHE 1196
SPFGKTDTASVLQEAIEYIKFLHDQVT+ DENENHE
Sbjct: 227 SPFGKTDTASVLQEAIEYIKFLHDQVTI------------------SGKSKSQDENENHE 268
Query: 1197 LRGHGLCLVPISSTFPVANETTADFWTPTFGGNNFR 1304
LRGHGLCLVPISSTFPVANETTADFWTPTFGGNNFR
Sbjct: 269 LRGHGLCLVPISSTFPVANETTADFWTPTFGGNNFR 304
>dbj|BAB02240.1| gene_id:F3H11.2~unknown protein [Arabidopsis thaliana]
Length = 516
Score = 148 bits (373), Expect = 3e-34
Identities = 82/161 (50%), Positives = 101/161 (61%), Gaps = 3/161 (1%)
Frame = +3
Query: 819 PQIISTRLEDKTKNLKTRAQSES--LKRA-KDNESAAKKPRVTTPSPLPTFKVRKENLRD 989
PQI +++ KN+ S S +KR D++ AAK+ + SP P FK RKE + D
Sbjct: 356 PQIHPQSFDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFK-RKEKMGD 414
Query: 990 QITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMXXXXXXXXXXXXXXXXX 1169
+I +LQQLVSPFGKTD ASVL EAIEYIKFLH QV+ LS PYM
Sbjct: 415 RIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYM--KSGASLQHQQSDHST 472
Query: 1170 XXDENENHELRGHGLCLVPISSTFPVANETTADFWTPTFGG 1292
+ +E +LR GLCLVP+SSTFPV ++TT DFWTPTFGG
Sbjct: 473 ELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFGG 513
>ref|NP_188700.1| hypothetical protein; protein id: At3g20640.1 [Arabidopsis
thaliana]|gi|26451163|dbj|BAC42685.1| putative bHLH
transcription factor bHLH123 [Arabidopsis thaliana]
Length = 454
Score = 148 bits (373), Expect = 3e-34
Identities = 82/161 (50%), Positives = 101/161 (61%), Gaps = 3/161 (1%)
Frame = +3
Query: 819 PQIISTRLEDKTKNLKTRAQSES--LKRA-KDNESAAKKPRVTTPSPLPTFKVRKENLRD 989
PQI +++ KN+ S S +KR D++ AAK+ + SP P FK RKE + D
Sbjct: 294 PQIHPQSFDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFK-RKEKMGD 352
Query: 990 QITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMXXXXXXXXXXXXXXXXX 1169
+I +LQQLVSPFGKTD ASVL EAIEYIKFLH QV+ LS PYM
Sbjct: 353 RIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYM--KSGASLQHQQSDHST 410
Query: 1170 XXDENENHELRGHGLCLVPISSTFPVANETTADFWTPTFGG 1292
+ +E +LR GLCLVP+SSTFPV ++TT DFWTPTFGG
Sbjct: 411 ELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFGG 451
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 98469285620
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)