BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV794972.r
         (436 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S56656  thioglucosidase (EC 3.2.1.147) precursor, 70K -...    33   0.77 
dbj|BAB17227.1|  myrosinase [Raphanus sativus]                     32   1.7  
sp|Q00326|MYRO_BRANA  Myrosinase precursor (Sinigrinase) (Th...    32   1.7  
pir||S39550  thioglucosidase (EC 3.2.1.147) Myr2.Bn1 precurs...    32   1.7  
emb|CAA11412.1|  myrosinase, thioglucoside glucohydrolase [B...    30   5.0  

>pir||S56656 thioglucosidase (EC 3.2.1.147) precursor, 70K -
           rape|gi|840725|emb|CAA55685.1| myrosinase [Brassica
           napus]
          Length = 547

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 415 GQRQQ*CWRGPTTKARMSLGLRKFGIIIYHKLIDRYIFKNI 293
           G R    W     K ++S G+ K G+  YH+LID  I KNI
Sbjct: 113 GYRFSFAWSRIIPKGKVSRGVNKGGLEYYHRLIDGLIAKNI 153



>dbj|BAB17227.1| myrosinase [Raphanus sativus]
          Length = 546

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 415 GQRQQ*CWRGPTTKARMSLGLRKFGIIIYHKLIDRYIFKNI 293
           G R    W     K ++S G+ + G+  YHKLID  + KNI
Sbjct: 112 GYRFSFAWSRIIPKGKVSRGVNQGGLEYYHKLIDALLEKNI 152



>sp|Q00326|MYRO_BRANA Myrosinase precursor (Sinigrinase)
           (Thioglucosidase)|gi|282892|pir||S26149 thioglucosidase
           (EC 3.2.1.147) MYR1 precursor -
           rape|gi|22595|emb|CAA42775.1| myrosinase [Brassica
           napus]
          Length = 548

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 415 GQRQQ*CWRGPTTKARMSLGLRKFGIIIYHKLIDRYIFKNI 293
           G R    W     K ++S G+ + G+  YHKLID  + KNI
Sbjct: 113 GYRFSFAWSRIIPKGKVSRGVNQGGLDYYHKLIDALLEKNI 153



>pir||S39550 thioglucosidase (EC 3.2.1.147) Myr2.Bn1 precursor -
           rape|gi|414103|emb|CAA79990.1| myrosinase, thioglucoside
           glucohydrolase [Brassica napus]
          Length = 544

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 415 GQRQQ*CWRGPTTKARMSLGLRKFGIIIYHKLIDRYIFKNI 293
           G R    W     K ++S G+ + G+  YHKLID  + KNI
Sbjct: 109 GYRFSFAWSRIIPKGKVSRGVNQGGLDYYHKLIDALLEKNI 149



>emb|CAA11412.1| myrosinase, thioglucoside glucohydrolase [Brassica juncea]
          Length = 547

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 415 GQRQQ*CWRGPTTKARMSLGLRKFGIIIYHKLIDRYIFKNI 293
           G R    W     K ++S G+ + G+  YH+LID  + KNI
Sbjct: 113 GYRFSFAWSRIIPKGKVSRGVNQGGLDYYHQLIDALLEKNI 153



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 120
effective length of database: 268,503,021
effective search space used: 6444072504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)