BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AI996856.x
(396 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC30442.1| unnamed protein product [Mus musculus] 30 9.1
ref|XP_141803.1| similar to hypothetical protein [Homo sapi... 30 9.1
ref|XP_091830.4| similar to RIKEN cDNA 9530074E10 [Mus musc... 30 9.1
dbj|BAC35254.1| unnamed protein product [Mus musculus] 30 9.1
dbj|BAC25436.1| unnamed protein product [Mus musculus] 30 9.1
>dbj|BAC30442.1| unnamed protein product [Mus musculus]
Length = 782
Score = 29.6 bits (65), Expect = 9.1
Identities = 22/71 (30%), Positives = 34/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 114 EIKLIKDYFLYSLSNFIRL----NQTGNIYPEPKQGLILSDQRC*GAIEYLTGEFQCIHV 281
+I LIK ++L+N RL NQ +YPE GL ++YL E+ I
Sbjct: 412 QITLIKGEVFHNLTNLRRLYLNGNQIERLYPEIFSGL--------HNLQYLYLEYNLIKE 463
Query: 282 LCSASFLKVPN 314
+ + +F +PN
Sbjct: 464 ILAGTFDSMPN 474
>ref|XP_141803.1| similar to hypothetical protein [Homo sapiens] [Mus
musculus]|gi|25030433|ref|XP_205166.1| similar to
hypothetical protein [Homo sapiens] [Mus musculus]
Length = 929
Score = 29.6 bits (65), Expect = 9.1
Identities = 22/71 (30%), Positives = 34/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 114 EIKLIKDYFLYSLSNFIRL----NQTGNIYPEPKQGLILSDQRC*GAIEYLTGEFQCIHV 281
+I LIK ++L+N RL NQ +YPE GL ++YL E+ I
Sbjct: 504 QITLIKGEVFHNLTNLRRLYLNGNQIERLYPEIFSGL--------HNLQYLYLEYNLIKE 555
Query: 282 LCSASFLKVPN 314
+ + +F +PN
Sbjct: 556 ILAGTFDSMPN 566
>ref|XP_091830.4| similar to RIKEN cDNA 9530074E10 [Mus musculus] [Homo sapiens]
Length = 323
Score = 29.6 bits (65), Expect = 9.1
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +3
Query: 21 LSVRLLQICRIHITFFNG*STLKTCTIVSYIEIKLIKDYFLYSLSNFIRLNQTGNIYPEP 200
L +R I RI F G S+LK + + I + L+N RLN +GN++
Sbjct: 112 LDLRNNLISRIDPGAFWGLSSLKRLDLTNN-RIGCLNANIFRGLTNLARLNLSGNLFSSL 170
Query: 201 KQGLILSDQRC*GAIEYLTG----EFQCIHVLCSASFL 302
Q G +YL+ EFQ ++LC + L
Sbjct: 171 PQ----------GTFDYLSSLRSLEFQTEYLLCDCNLL 198
>dbj|BAC35254.1| unnamed protein product [Mus musculus]
Length = 837
Score = 29.6 bits (65), Expect = 9.1
Identities = 22/71 (30%), Positives = 34/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 114 EIKLIKDYFLYSLSNFIRL----NQTGNIYPEPKQGLILSDQRC*GAIEYLTGEFQCIHV 281
+I LIK ++L+N RL NQ +YPE GL ++YL E+ I
Sbjct: 412 QITLIKGEVFHNLTNLRRLYLNGNQIERLYPEIFSGL--------HNLQYLYLEYNLIKE 463
Query: 282 LCSASFLKVPN 314
+ + +F +PN
Sbjct: 464 ILAGTFDSMPN 474
>dbj|BAC25436.1| unnamed protein product [Mus musculus]
Length = 385
Score = 29.6 bits (65), Expect = 9.1
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +3
Query: 21 LSVRLLQICRIHITFFNG*STLKTCTIVSYIEIKLIKDYFLYSLSNFIRLNQTGNIYPEP 200
L +R I RI F G S+LK + + L D F L+N +RLN +GN++
Sbjct: 141 LDLRNNLISRIAPGAFWGLSSLKRLDLTNNRIGCLNADVFR-GLTNLVRLNLSGNLFTSL 199
Query: 201 KQGLILSDQRC*GAIEYLTG----EFQCIHVLCSASFL 302
Q G +YL EFQ ++LC + L
Sbjct: 200 SQ----------GTFDYLGSLRSLEFQTEYLLCDCNIL 227
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 107
effective length of database: 285,910,619
effective search space used: 6861854856
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)