BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.012.Contig1
(984 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568225.1| Expressed protein; protein id: At5g09995.1... 397 e-109
gb|AAM62717.1| unknown [Arabidopsis thaliana] 395 e-109
dbj|BAB09420.1| gene_id:MYH9.21~unknown protein [Arabidopsi... 176 4e-43
gb|AAF22896.1|AC006932_13 T27G7.21 [Arabidopsis thaliana] 101 1e-20
ref|NP_172329.1| unknown protein; protein id: At1g08530.1, ... 79 1e-13
>ref|NP_568225.1| Expressed protein; protein id: At5g09995.1, supported by cDNA:
154063. [Arabidopsis
thaliana]|gi|26453006|dbj|BAC43579.1| unknown protein
[Arabidopsis thaliana]
Length = 205
Score = 397 bits (1020), Expect = e-109
Identities = 205/205 (100%), Positives = 205/205 (100%)
Frame = +2
Query: 77 MLFSPSKLQSPQSLISWNPILHNGFIDKNLSFRRRVTLRLASPISRLTKGSDSIASSTPS 256
MLFSPSKLQSPQSLISWNPILHNGFIDKNLSFRRRVTLRLASPISRLTKGSDSIASSTPS
Sbjct: 1 MLFSPSKLQSPQSLISWNPILHNGFIDKNLSFRRRVTLRLASPISRLTKGSDSIASSTPS 60
Query: 257 ALYSNPQEPSISSQLTSSVGQPPLQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPT 436
ALYSNPQEPSISSQLTSSVGQPPLQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPT
Sbjct: 61 ALYSNPQEPSISSQLTSSVGQPPLQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPT 120
Query: 437 LLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRA 616
LLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRA
Sbjct: 121 LLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRA 180
Query: 617 IRVAEDRLRRLTNMNPGGDASNQDR 691
IRVAEDRLRRLTNMNPGGDASNQDR
Sbjct: 181 IRVAEDRLRRLTNMNPGGDASNQDR 205
>gb|AAM62717.1| unknown [Arabidopsis thaliana]
Length = 205
Score = 395 bits (1014), Expect = e-109
Identities = 204/205 (99%), Positives = 204/205 (99%)
Frame = +2
Query: 77 MLFSPSKLQSPQSLISWNPILHNGFIDKNLSFRRRVTLRLASPISRLTKGSDSIASSTPS 256
MLFSPSKLQSPQSLISWNPILHNGFIDKNLSFRRRVTLRLASPISRLTKGSDSIASSTPS
Sbjct: 1 MLFSPSKLQSPQSLISWNPILHNGFIDKNLSFRRRVTLRLASPISRLTKGSDSIASSTPS 60
Query: 257 ALYSNPQEPSISSQLTSSVGQPPLQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPT 436
ALYSNPQEPSISSQLTSSVGQPPLQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPT
Sbjct: 61 ALYSNPQEPSISSQLTSSVGQPPLQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPT 120
Query: 437 LLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRA 616
LLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRA
Sbjct: 121 LLAFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRA 180
Query: 617 IRVAEDRLRRLTNMNPGGDASNQDR 691
IRVAEDRLRRLTNMNPGGDAS QDR
Sbjct: 181 IRVAEDRLRRLTNMNPGGDASTQDR 205
>dbj|BAB09420.1| gene_id:MYH9.21~unknown protein [Arabidopsis thaliana]
Length = 227
Score = 176 bits (447), Expect = 4e-43
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -1
Query: 255 EGVEDAIESEPLVNREIGEASRRVTRRRKERFLSMNPLWRIGFQEIRDWGDCNFEGENNI 76
EGVEDAIESEPLVNREIGEASRRVTRRRKERFLSMNPLWRIGFQEIRDWGDCNFEGENNI
Sbjct: 118 EGVEDAIESEPLVNREIGEASRRVTRRRKERFLSMNPLWRIGFQEIRDWGDCNFEGENNI 177
Query: 75 VNGFSSIRQKPLLSFESTITMDFSC 1
VNGFSSIRQKPLLSFESTITMDFSC
Sbjct: 178 VNGFSSIRQKPLLSFESTITMDFSC 202
Score = 39.7 bits (91), Expect = 0.069
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -3
Query: 625 YTNSPCRAFNTLSDTLA 575
YTNSPCRAFNTLSDTLA
Sbjct: 87 YTNSPCRAFNTLSDTLA 103
>gb|AAF22896.1|AC006932_13 T27G7.21 [Arabidopsis thaliana]
Length = 267
Score = 101 bits (252), Expect = 1e-20
Identities = 75/204 (36%), Positives = 112/204 (54%), Gaps = 27/204 (13%)
Frame = +2
Query: 119 ISWNPILHNG-FIDKNLSFRRRVTLRLASP--ISRLTKGSDSIASSTPSALYSNP--QEP 283
IS P++ + F+D + + R TL++ + +S T+ S S SS+ L SN
Sbjct: 7 ISTAPLIRSPPFLDLSPTSLNRFTLKIPASLYVSHPTRCSISNPSSSEELLNSNGGMSRA 66
Query: 284 SIS-------SQLTSSVGQPPL-----QLSQWTFTQKHFVLLNVVACVTAISASWLFFAA 427
SIS + L VG P L++ + + + F+LL + C T+++ + L A
Sbjct: 67 SISVFGGTSLNNLKMQVGSPISLHSINPLAKLSLSDQAFLLLAFIVCTTSVAFTSLVITA 126
Query: 428 IPTLL----------AFKKAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLG 577
IPTL+ A +AA S KL D R+ELP T+AAVRLSGMEISDLT+ELSDL
Sbjct: 127 IPTLVYVLYLLTHLQAMGRAATSFAKLADTARKELPSTLAAVRLSGMEISDLTLELSDLS 186
Query: 578 QGITQGVKSSTRAIRVAEDRLRRL 649
Q IT G+ S +A++ AE ++++
Sbjct: 187 QDITDGINKSAKAVQAAEAGIKQI 210
>ref|NP_172329.1| unknown protein; protein id: At1g08530.1, supported by cDNA:
gi_18491148 [Arabidopsis
thaliana]|gi|7485977|pir||T00706 hypothetical protein
F22O13.1 - Arabidopsis
thaliana|gi|9802549|gb|AAF99751.1|AC003981_1 F22O13.1
[Arabidopsis thaliana]|gi|18491149|gb|AAL69477.1|
unknown protein [Arabidopsis thaliana]
Length = 125
Score = 78.6 bits (192), Expect = 1e-13
Identities = 38/66 (57%), Positives = 50/66 (75%)
Frame = +2
Query: 452 KAAESLEKLLDVTREELPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAE 631
+AA S KL D R+ELP T+AAVRLSGMEISDLT+ELSDL Q IT G+ S +A++ AE
Sbjct: 3 RAATSFAKLADTARKELPSTLAAVRLSGMEISDLTLELSDLSQDITDGINKSAKAVQAAE 62
Query: 632 DRLRRL 649
++++
Sbjct: 63 AGIKQI 68
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 123
effective length of database: 264,485,883
effective search space used: 53955120132
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)