BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.011.Contig1
         (507 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_564839.1|  expressed protein; protein id: At1g64750.1...    98   6e-20
ref|NP_199314.1|  putative protein; protein id: At5g45010.1,...    79   2e-14
gb|AAM64332.1|  unknown [Arabidopsis thaliana]                     79   2e-14
dbj|BAB90351.1|  B1012D10.27 [Oryza sativa (japonica cultiva...    48   5e-05
gb|AAA73419.1|  cytochrome C oxidase subunit III                   36   0.21 

>ref|NP_564839.1| expressed protein; protein id: At1g64750.1, supported by cDNA:
           15169., supported by cDNA: gi_17529175, supported by
           cDNA: gi_20465396 [Arabidopsis
           thaliana]|gi|25404488|pir||F96670 hypothetical protein
           F13O11.6 [imported] - Arabidopsis
           thaliana|gi|5042411|gb|AAD38250.1|AC006193_6 Unknown
           protein [Arabidopsis
           thaliana]|gi|17529176|gb|AAL38814.1| unknown protein
           [Arabidopsis thaliana]|gi|20465397|gb|AAM20123.1|
           unknown protein [Arabidopsis
           thaliana]|gi|21553571|gb|AAM62664.1| unknown
           [Arabidopsis thaliana]
          Length = 74

 Score = 97.8 bits (242), Expect = 6e-20
 Identities = 52/74 (70%), Positives = 52/74 (70%)
 Frame = +2

Query: 77  MAAEPKAATAEVVKMDLXXXXXXXXXXXINEDWLEKEEVKEVSQQWEXXXXXXXXXXXFS 256
           MAAEPKAATAEVVKMDL           INEDWLEKEEVKEVSQQWE           FS
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 257 RQLRKELENGTDKK 298
           RQLRKELENGTDKK
Sbjct: 61  RQLRKELENGTDKK 74



>ref|NP_199314.1| putative protein; protein id: At5g45010.1, supported by cDNA:
           gi_17380729, supported by cDNA: gi_20259068 [Arabidopsis
           thaliana]|gi|10177493|dbj|BAB10884.1|
           gb|AAD38250.1~gene_id:K21C13.20~similar to unknown
           protein [Arabidopsis
           thaliana]|gi|17380730|gb|AAL36195.1| unknown protein
           [Arabidopsis thaliana]|gi|20259069|gb|AAM14250.1|
           unknown protein [Arabidopsis thaliana]
          Length = 73

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 44/74 (59%), Positives = 48/74 (64%)
 Frame = +2

Query: 77  MAAEPKAATAEVVKMDLXXXXXXXXXXXINEDWLEKEEVKEVSQQWEXXXXXXXXXXXFS 256
           MAAEPKAA  EVVK+DL           INEDWLEKEEVKEVS QWE           FS
Sbjct: 1   MAAEPKAAV-EVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFS 59

Query: 257 RQLRKELENGTDKK 298
           RQL+KELEN ++KK
Sbjct: 60  RQLKKELENASEKK 73



>gb|AAM64332.1| unknown [Arabidopsis thaliana]
          Length = 73

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 44/74 (59%), Positives = 48/74 (64%)
 Frame = +2

Query: 77  MAAEPKAATAEVVKMDLXXXXXXXXXXXINEDWLEKEEVKEVSQQWEXXXXXXXXXXXFS 256
           MAAEPKAA  EVVK+DL           INEDWLEKEEVKEVS QWE           FS
Sbjct: 1   MAAEPKAAV-EVVKVDLFEDDGEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFS 59

Query: 257 RQLRKELENGTDKK 298
           RQL+KELEN ++KK
Sbjct: 60  RQLKKELENASEKK 73



>dbj|BAB90351.1| B1012D10.27 [Oryza sativa (japonica cultivar-group)]
          Length = 75

 Score = 48.1 bits (113), Expect = 5e-05
 Identities = 30/70 (42%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
 Frame = +2

Query: 77  MAAEPKA-ATAEVVKMDLXXXXXXXXXXXINEDWLEKEEVKEVSQQWEXXXXXXXXXXXF 253
           MA   KA A AE  KMDL           I+++W +KEE  E  QQWE           F
Sbjct: 1   MADTAKADAAAEAAKMDLLEDDDEFEEFEIDQEWDDKEEGNEAVQQWEDDWDDDDVNDDF 60

Query: 254 SRQLRKELEN 283
           S QLRKELE+
Sbjct: 61  SLQLRKELES 70



>gb|AAA73419.1| cytochrome C oxidase subunit III
          Length = 288

 Score = 36.2 bits (82), Expect = 0.21
 Identities = 16/36 (44%), Positives = 21/36 (57%), Gaps = 4/36 (11%)
 Frame = +2

Query: 338 EIFVFFYD----LELCLYCIIWFMLSVLLFLCTFYY 433
           +IF   YD    L  C YC +WF+LS LL   +F+Y
Sbjct: 71  DIFRGLYDTSTLLRACQYCFVWFVLSELLLFASFFY 106



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 114
effective length of database: 276,537,297
effective search space used: 14933014038
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)