BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.0.cl.010.Contig2
(524 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01033 hypothetical protein YUP8H12R.16 - Arabidopsis ... 186 2e-46
gb|AAM67109.1| putative DNA-binding protein [Arabidopsis th... 29 0.015
ref|NP_177880.1| putative DNA-binding protein; protein id: ... 29 0.020
pir||D96841 F23A5.22 [imported] - Arabidopsis thaliana|gi|6... 37 0.18
ref|NP_015390.1| The ROX1 gene encodes a heme-induced repre... 35 0.67
>pir||T01033 hypothetical protein YUP8H12R.16 - Arabidopsis
thaliana|gi|3152580|gb|AAC17061.1| Contains similarity
to heat shock transcription factor HSF8 gb|X67600 from
Lycopersicon peruvianum. [Arabidopsis thaliana]
Length = 102
Score = 186 bits (471), Expect = 2e-46
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 1 LSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMYIYTYKDYISE 180
LSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMYIYTYKDYISE
Sbjct: 11 LSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMYIYTYKDYISE 70
Query: 181 FGIVSHLVFVVDDWALEELRSQSNENVDMSIL 276
FGIVSHLVFVVDDWALEELRSQSNENVDMSIL
Sbjct: 71 FGIVSHLVFVVDDWALEELRSQSNENVDMSIL 102
>gb|AAM67109.1| putative DNA-binding protein [Arabidopsis thaliana]
Length = 125
Score = 29.3 bits (64), Expect(3) = 0.015
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 38 WNLEALHREVLPKSIEFGRHYLEFMTELNLH 130
WN+ +R +LPK ++ G + F + L H
Sbjct: 34 WNVGEFYRRILPKYVDLGTNLSRFFSNLRSH 64
Score = 24.6 bits (52), Expect(3) = 0.015
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +3
Query: 3 ISWSKSHNSFIV 38
ISWS+S+NSFI+
Sbjct: 22 ISWSESNNSFII 33
Score = 24.3 bits (51), Expect(3) = 0.015
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +3
Query: 255 ECGHEYFVRGQPELLVKMM 311
E GHE FVR + EL+ KM+
Sbjct: 77 EFGHEDFVRDKLELMKKMV 95
>ref|NP_177880.1| putative DNA-binding protein; protein id: At1g77570.1, supported by
cDNA: 9552. [Arabidopsis
thaliana]|gi|25406512|pir||B96805 probable DNA-binding
protein, 53937-54314 [imported] - Arabidopsis
thaliana|gi|12323383|gb|AAG51664.1|AC010704_8 putative
DNA-binding protein; 53937-54314 [Arabidopsis thaliana]
Length = 125
Score = 29.3 bits (64), Expect(3) = 0.020
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 38 WNLEALHREVLPKSIEFGRHYLEFMTELNLH 130
WN+ +R +LPK ++ G + F + L H
Sbjct: 34 WNVGEFYRRILPKYVDLGTNLSRFFSNLRSH 64
Score = 24.6 bits (52), Expect(3) = 0.020
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +3
Query: 3 ISWSKSHNSFIV 38
ISWS+S+NSFI+
Sbjct: 22 ISWSESNNSFII 33
Score = 23.9 bits (50), Expect(3) = 0.020
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 255 ECGHEYFVRGQPELLVKMM 311
E GHE F+R + EL+ KM+
Sbjct: 77 EFGHEDFIRDKLELMKKMV 95
>pir||D96841 F23A5.22 [imported] - Arabidopsis
thaliana|gi|6503298|gb|AAF14674.1|AC011713_22 F23A5.22
[Arabidopsis thaliana]
Length = 138
Score = 36.6 bits (83), Expect = 0.18
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = -3
Query: 345 KFLKPLHPRF*TSSSPKAQVGLSQNTHVHILIALT 241
KFL PLHP F KAQVGLSQ+TH + LT
Sbjct: 51 KFLNPLHPSF--EHHLKAQVGLSQSTHSETIQELT 83
>ref|NP_015390.1| The ROX1 gene encodes a heme-induced repressor of hypoxic genes in
yeast.; Rox1p [Saccharomyces
cerevisiae]|gi|133277|sp|P25042|ROX1_YEAST ROX1
repressor (Hypoxic function repressor) (Heme-dependent
repression factor)|gi|1078044|pir||A54430 hypoxic
function transcription repressor ROX1 - yeast
(Saccharomyces cerevisiae)|gi|4362|emb|CAA42991.1| ROX1
repressor [Saccharomyces
cerevisiae]|gi|805045|emb|CAA89182.1| Rox1p
[Saccharomyces cerevisiae]|gi|1314133|emb|CAA94973.1|
Rox1p [Saccharomyces cerevisiae]
Length = 368
Score = 34.7 bits (78), Expect = 0.67
Identities = 24/89 (26%), Positives = 42/89 (46%), Gaps = 4/89 (4%)
Frame = -2
Query: 286 WPLTKYSCPHSHCSDSLILLKPSRQQQKQDERRFQTRRYNLCMYIYTYNKTYM*VEFGHK 107
+P KY P +LLK QQQ+Q ++ Q ++ + +N + ++ H
Sbjct: 79 YPEYKYK-PVRKSKKKQLLLKEIEQQQQQQQKEQQQQKQSQPQLQQPFNNNIVLMKRAHS 137
Query: 106 L----QVMSAKFYRFRQNFSVKRFQIPTM 32
L V S+ Y+F+ N +KR IP++
Sbjct: 138 LSPSSSVSSSNSYQFQLNNDLKRLPIPSV 166
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 115
effective length of database: 275,198,251
effective search space used: 16236696809
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)