BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.010.Contig2
         (524 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T01033  hypothetical protein YUP8H12R.16 - Arabidopsis ...   186   2e-46
gb|AAM67109.1|  putative DNA-binding protein [Arabidopsis th...    29   0.015
ref|NP_177880.1|  putative DNA-binding protein; protein id: ...    29   0.020
pir||D96841  F23A5.22 [imported] - Arabidopsis thaliana|gi|6...    37   0.18 
ref|NP_015390.1|  The ROX1 gene encodes a heme-induced repre...    35   0.67 
>pir||T01033 hypothetical protein YUP8H12R.16 - Arabidopsis
           thaliana|gi|3152580|gb|AAC17061.1| Contains similarity
           to heat shock transcription factor HSF8 gb|X67600 from
           Lycopersicon peruvianum. [Arabidopsis thaliana]
          Length = 102

 Score =  186 bits (471), Expect = 2e-46
 Identities = 92/92 (100%), Positives = 92/92 (100%)
 Frame = +1

Query: 1   LSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMYIYTYKDYISE 180
           LSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMYIYTYKDYISE
Sbjct: 11  LSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMYIYTYKDYISE 70

Query: 181 FGIVSHLVFVVDDWALEELRSQSNENVDMSIL 276
           FGIVSHLVFVVDDWALEELRSQSNENVDMSIL
Sbjct: 71  FGIVSHLVFVVDDWALEELRSQSNENVDMSIL 102
>gb|AAM67109.1| putative DNA-binding protein [Arabidopsis thaliana]
          Length = 125

 Score = 29.3 bits (64), Expect(3) = 0.015
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 38  WNLEALHREVLPKSIEFGRHYLEFMTELNLH 130
           WN+   +R +LPK ++ G +   F + L  H
Sbjct: 34  WNVGEFYRRILPKYVDLGTNLSRFFSNLRSH 64

 Score = 24.6 bits (52), Expect(3) = 0.015
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 3  ISWSKSHNSFIV 38
          ISWS+S+NSFI+
Sbjct: 22 ISWSESNNSFII 33

 Score = 24.3 bits (51), Expect(3) = 0.015
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +3

Query: 255 ECGHEYFVRGQPELLVKMM 311
           E GHE FVR + EL+ KM+
Sbjct: 77  EFGHEDFVRDKLELMKKMV 95
>ref|NP_177880.1| putative DNA-binding protein; protein id: At1g77570.1, supported by
           cDNA: 9552. [Arabidopsis
           thaliana]|gi|25406512|pir||B96805 probable DNA-binding
           protein, 53937-54314 [imported] - Arabidopsis
           thaliana|gi|12323383|gb|AAG51664.1|AC010704_8 putative
           DNA-binding protein; 53937-54314 [Arabidopsis thaliana]
          Length = 125

 Score = 29.3 bits (64), Expect(3) = 0.020
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 38  WNLEALHREVLPKSIEFGRHYLEFMTELNLH 130
           WN+   +R +LPK ++ G +   F + L  H
Sbjct: 34  WNVGEFYRRILPKYVDLGTNLSRFFSNLRSH 64

 Score = 24.6 bits (52), Expect(3) = 0.020
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 3  ISWSKSHNSFIV 38
          ISWS+S+NSFI+
Sbjct: 22 ISWSESNNSFII 33

 Score = 23.9 bits (50), Expect(3) = 0.020
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 255 ECGHEYFVRGQPELLVKMM 311
           E GHE F+R + EL+ KM+
Sbjct: 77  EFGHEDFIRDKLELMKKMV 95
>pir||D96841 F23A5.22 [imported] - Arabidopsis
           thaliana|gi|6503298|gb|AAF14674.1|AC011713_22 F23A5.22
           [Arabidopsis thaliana]
          Length = 138

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = -3

Query: 345 KFLKPLHPRF*TSSSPKAQVGLSQNTHVHILIALT 241
           KFL PLHP F      KAQVGLSQ+TH   +  LT
Sbjct: 51  KFLNPLHPSF--EHHLKAQVGLSQSTHSETIQELT 83
>ref|NP_015390.1| The ROX1 gene encodes a heme-induced repressor of hypoxic genes in
           yeast.; Rox1p [Saccharomyces
           cerevisiae]|gi|133277|sp|P25042|ROX1_YEAST ROX1
           repressor (Hypoxic function repressor) (Heme-dependent
           repression factor)|gi|1078044|pir||A54430 hypoxic
           function transcription repressor ROX1 - yeast
           (Saccharomyces cerevisiae)|gi|4362|emb|CAA42991.1| ROX1
           repressor [Saccharomyces
           cerevisiae]|gi|805045|emb|CAA89182.1| Rox1p
           [Saccharomyces cerevisiae]|gi|1314133|emb|CAA94973.1|
           Rox1p [Saccharomyces cerevisiae]
          Length = 368

 Score = 34.7 bits (78), Expect = 0.67
 Identities = 24/89 (26%), Positives = 42/89 (46%), Gaps = 4/89 (4%)
 Frame = -2

Query: 286 WPLTKYSCPHSHCSDSLILLKPSRQQQKQDERRFQTRRYNLCMYIYTYNKTYM*VEFGHK 107
           +P  KY  P        +LLK   QQQ+Q ++  Q ++ +       +N   + ++  H 
Sbjct: 79  YPEYKYK-PVRKSKKKQLLLKEIEQQQQQQQKEQQQQKQSQPQLQQPFNNNIVLMKRAHS 137

Query: 106 L----QVMSAKFYRFRQNFSVKRFQIPTM 32
           L     V S+  Y+F+ N  +KR  IP++
Sbjct: 138 LSPSSSVSSSNSYQFQLNNDLKRLPIPSV 166
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 115
effective length of database: 275,198,251
effective search space used: 16236696809
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results