BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.010.Contig1
         (1444 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T01033  hypothetical protein YUP8H12R.16 - Arabidopsis ...   117   3e-25
gb|AAM91638.1|  unknown protein [Arabidopsis thaliana]             48   4e-04
gb|AAM67109.1|  putative DNA-binding protein [Arabidopsis th...    47   6e-04
ref|NP_177880.1|  putative DNA-binding protein; protein id: ...    47   7e-04
emb|CAB63800.1|  heat shock factor 2 [Arabidopsis thaliana]        46   0.002

>pir||T01033 hypothetical protein YUP8H12R.16 - Arabidopsis
            thaliana|gi|3152580|gb|AAC17061.1| Contains similarity to
            heat shock transcription factor HSF8 gb|X67600 from
            Lycopersicon peruvianum. [Arabidopsis thaliana]
          Length = 102

 Score =  117 bits (294), Expect = 3e-25
 Identities = 68/102 (66%), Positives = 68/102 (66%), Gaps = 33/102 (32%)
 Frame = +1

Query: 991  MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLT------- 1149
            MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLT       
Sbjct: 1    MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMY 60

Query: 1150 --------------------------*ELRSQSNENVDMSIL 1197
                                       ELRSQSNENVDMSIL
Sbjct: 61   IYTYKDYISEFGIVSHLVFVVDDWALEELRSQSNENVDMSIL 102



>gb|AAM91638.1| unknown protein [Arabidopsis thaliana]
          Length = 131

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 34/92 (36%), Positives = 47/92 (50%), Gaps = 4/92 (4%)
 Frame = +3

Query: 987  YNVVDDP*LDPIISWSKSHNSFIVGIWKRFTEKFCRNR*NLADITWSL*PNSTY----IR 1154
            Y +V+DP  DPIISWSKS+N F++   +         R N   ++  L     Y    ++
Sbjct: 17   YKLVEDPSSDPIISWSKSNNGFVMCNEEARIRSKILLRFNCGKLSEFLSELKYYGFTRVK 76

Query: 1155 IKESEQ*ECGHEYFVRGQPELLVKMMFKTGMK 1250
              +S + E  +E FVRGQPE L  MM K   K
Sbjct: 77   KTDSGKMEFRNEDFVRGQPERLRDMMLKACRK 108



>gb|AAM67109.1| putative DNA-binding protein [Arabidopsis thaliana]
          Length = 125

 Score = 47.4 bits (111), Expect = 6e-04
 Identities = 34/88 (38%), Positives = 47/88 (52%), Gaps = 4/88 (4%)
 Frame = +3

Query: 981  RRYNVVDDP*LDPIISWSKSHNSFIV----GIWKRFTEKFCRNR*NLADITWSL*PNSTY 1148
            R Y VVDD   D IISWS+S+NSFI+      ++R   K+     NL+    +L  +   
Sbjct: 8    RVYEVVDDASTDAIISWSESNNSFIIWNVGEFYRRILPKYVDLGTNLSRFFSNLRSHGFK 67

Query: 1149 IRIKESEQ*ECGHEYFVRGQPELLVKMM 1232
            I    +   E GHE FVR + EL+ KM+
Sbjct: 68   IVKGRTGVLEFGHEDFVRDKLELMKKMV 95



>ref|NP_177880.1| putative DNA-binding protein; protein id: At1g77570.1, supported by
            cDNA: 9552. [Arabidopsis
            thaliana]|gi|25406512|pir||B96805 probable DNA-binding
            protein, 53937-54314 [imported] - Arabidopsis
            thaliana|gi|12323383|gb|AAG51664.1|AC010704_8 putative
            DNA-binding protein; 53937-54314 [Arabidopsis thaliana]
          Length = 125

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 33/88 (37%), Positives = 47/88 (52%), Gaps = 4/88 (4%)
 Frame = +3

Query: 981  RRYNVVDDP*LDPIISWSKSHNSFIV----GIWKRFTEKFCRNR*NLADITWSL*PNSTY 1148
            R Y VVDD   D IISWS+S+NSFI+      ++R   K+     NL+    +L  +   
Sbjct: 8    RVYEVVDDASTDAIISWSESNNSFIIWNVGEFYRRILPKYVDLGTNLSRFFSNLRSHGFK 67

Query: 1149 IRIKESEQ*ECGHEYFVRGQPELLVKMM 1232
            I    +   E GHE F+R + EL+ KM+
Sbjct: 68   IVKGRTGVLEFGHEDFIRDKLELMKKMV 95



>emb|CAB63800.1| heat shock factor 2 [Arabidopsis thaliana]
          Length = 468

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 26/82 (31%), Positives = 47/82 (56%), Gaps = 1/82 (1%)
 Frame = +3

Query: 978  TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTEKFCRNR*NLADITWSL*PNSTY-IR 1154
            ++ Y++VDDP  D ++SWS  +NSF+V     F ++F     N  + +  +   +TY  R
Sbjct: 26   SKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFNHNNFSSFVRQLNTYGFR 85

Query: 1155 IKESEQ*ECGHEYFVRGQPELL 1220
              + ++ E  +E F+RGQ ++L
Sbjct: 86   KVDPDRWEFANEGFLRGQKQIL 107



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 91472783747
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)