BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV526765.f
         (424 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAA13940.1|  agCP8846 [Anopheles gambiae str. PEST]             34   0.46 
ref|NP_220851.1|  unknown [Rickettsia prowazekii]|gi|6647956...    33   1.0  
gb|EAA26482.1|  unknown [Rickettsia sibirica]                      33   1.0  
pir||S47997  kinesin light chain (isoform 1) - Caenorhabditi...    32   1.8  
sp|P46822|KLC_CAEEL  Kinesin light chain (KLC)|gi|542479|pir...    32   1.8  

>gb|EAA13940.1| agCP8846 [Anopheles gambiae str. PEST]
          Length = 477

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 186 YLVVLKGMNEKEFGPISGKFQDLHQVIHEREKSKASKKE 70
           Y  VL   +E+EFG I+G+ + + QV  ERE++K   +E
Sbjct: 382 YKEVLTRAHEREFGAINGENKPIWQVAEEREENKLKNRE 420



>ref|NP_220851.1| unknown [Rickettsia prowazekii]|gi|6647956|sp|Q9ZD72|Y472_RICPR
           Hypothetical protein RP472|gi|7467769|pir||E71706
           hypothetical protein RP472 - Rickettsia
           prowazekii|gi|3861027|emb|CAA14927.1| unknown
           [Rickettsia prowazekii]
          Length = 334

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 22/59 (37%), Positives = 32/59 (53%)
 Frame = +3

Query: 18  RIALICQSFLVTFFAFAVLSYLPCFSLVHVLLDASLETFPILDQTLFHSCLLGLLSMNS 194
           R+ LIC +FL  +F F  + +     +V  L D ++ET      TLF S +LGLL + S
Sbjct: 3   RLLLICITFLALYFGFTFIKHFDS-KVVISLYDYNIET------TLFLSVILGLLLLVS 54



>gb|EAA26482.1| unknown [Rickettsia sibirica]
          Length = 334

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 21/59 (35%), Positives = 32/59 (53%)
 Frame = +3

Query: 18  RIALICQSFLVTFFAFAVLSYLPCFSLVHVLLDASLETFPILDQTLFHSCLLGLLSMNS 194
           R+ LIC +FL+ +F F  +        ++ L D ++ET      TLF S +LGLL + S
Sbjct: 3   RLLLICATFLLLYFGFTFIERFDSKVFIN-LYDYNIET------TLFFSLILGLLLLIS 54



>pir||S47997 kinesin light chain (isoform 1) - Caenorhabditis elegans
          Length = 563

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 186 YLVVLKGMNEKEFGPISGKFQDLHQVIHEREKSK 85
           Y  +L   +E+EFG ISG+ + + Q+  ERE++K
Sbjct: 397 YKQILTRAHEREFGQISGENKPIWQIAEEREENK 430



>sp|P46822|KLC_CAEEL Kinesin light chain (KLC)|gi|542479|pir||S41864 kinesin light chain
           (isoform 1) - Caenorhabditis
           elegans|gi|452602|emb|CAA82752.1| kinesin light chain
           (isoform 1) [Caenorhabditis elegans]
          Length = 540

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 186 YLVVLKGMNEKEFGPISGKFQDLHQVIHEREKSK 85
           Y  +L   +E+EFG ISG+ + + Q+  ERE++K
Sbjct: 397 YKQILTRAHEREFGQISGENKPIWQIAEEREENK 430



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 116
effective length of database: 273,859,205
effective search space used: 6572620920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)