BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.0.cl.001.Contig1
         (488 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_565714.1|  expressed protein; protein id: At2g31090.1...    52   3e-06
pir||D84716  hypothetical protein At2g31090 [imported] - Ara...    50   1e-05

>ref|NP_565714.1| expressed protein; protein id: At2g31090.1, supported by cDNA:
           10986. [Arabidopsis thaliana]|gi|20197329|gb|AAC63841.2|
           expressed protein [Arabidopsis
           thaliana]|gi|21536740|gb|AAM61072.1| unknown
           [Arabidopsis thaliana]
          Length = 75

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +1

Query: 301 EIAIGLIKAPIHVMEWFMSKIPC 369
           EIAIGLIKAPIHVMEWFMSKIPC
Sbjct: 53  EIAIGLIKAPIHVMEWFMSKIPC 75



>pir||D84716 hypothetical protein At2g31090 [imported] - Arabidopsis thaliana
          Length = 20

 Score = 50.1 bits (118), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 261 MHMSMLLVCDCTSGDRNWFD 320
           MHMSMLLVCDCTSGDRNWFD
Sbjct: 1   MHMSMLLVCDCTSGDRNWFD 20



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 113
effective length of database: 277,876,343
effective search space used: 13615940807
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)